Factsheet for TraesCS1A01G067600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G067800.1	Wheat	cytosol	38.13	82.89
TraesCS1D01G068900.1	Wheat	mitochondrion	80.93	80.93
HORVU1Hr1G014040.1	Barley	mitochondrion	82.9	80.91
TraesCS1A01G067400.1	Wheat	mitochondrion	81.8	80.61
TraesCS1A01G067700.1	Wheat	extracellular	31.73	76.56
TraesCS1A01G055500.1	Wheat	mitochondrion	19.8	74.19
TraesCS1A01G067000.1	Wheat	mitochondrion	63.1	71.65
TraesCS1A01G055600.1	Wheat	cytosol	28.29	70.77
TraesCS1A01G054700.2	Wheat	mitochondrion	70.6	70.69
TraesCS6A01G311600.1	Wheat	mitochondrion	72.57	70.57
TraesCS1A01G073700.1	Wheat	cytosol	33.33	70.39
TraesCS1A01G054800.1	Wheat	cytosol	50.31	70.27
TraesCS1A01G055800.1	Wheat	mitochondrion	66.17	69.78
TraesCS1A01G073600.1	Wheat	mitochondrion	33.58	69.64
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	61.38	69.6
TraesCS1A01G056000.1	Wheat	cytosol	33.95	68.66
TraesCS1A01G073800.1	Wheat	mitochondrion	27.92	68.17
TraesCS1A01G054500.1	Wheat	mitochondrion	65.31	68.08
TraesCS1A01G066600.1	Wheat	mitochondrion	21.77	67.3
TraesCS1A01G057300.1	Wheat	cytosol	57.81	65.46
TraesCS1A01G031600.1	Wheat	cytosol	49.82	61.18
TraesCS1A01G074000.1	Wheat	mitochondrion	21.28	61.13
TraesCS1A01G031700.1	Wheat	plastid	53.26	58.43
TraesCS2A01G530600.1	Wheat	cytosol	54.98	58.43
TraesCS2A01G531000.1	Wheat	golgi	48.22	57.73
KXG28799	Sorghum	plastid	53.75	57.5
TraesCS2A01G526200.1	Wheat	golgi	48.09	57.42
TraesCS2A01G531100.1	Wheat	cytosol	40.1	57.29
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	35.79	56.95
Zm00001d007534_P001	Maize	plastid	53.87	56.37
Zm00001d007559_P001	Maize	plastid	56.33	56.06
Zm00001d007548_P001	Maize	plastid	56.09	56.02
Zm00001d007531_P001	Maize	plastid	55.84	55.77
Zm00001d007555_P001	Maize	plastid	55.6	55.53
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	32.23	54.13
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	24.72	53.17
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.94	53.0
KXG35774	Sorghum	cytosol, mitochondrion	30.5	52.43
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	31.98	51.69
TraesCS6A01G014600.1	Wheat	cytosol	23.25	47.85
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	41.82	47.62
Os04t0349600-01	Rice	plastid	21.89	45.99
TraesCS6A01G015000.1	Wheat	mitochondrion	23.12	45.3
Os04t0351333-00	Rice	cytosol	47.6	44.03
TraesCS6A01G083000.1	Wheat	cytosol	24.11	42.98
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	13.28	42.69
Solyc06g007280.2.1	Tomato	cytosol	11.07	35.29
VIT_14s0081g00110.t01	Wine grape	cytosol	19.56	32.38
KRH39054	Soybean	cytosol	19.68	32.19
KRH39074	Soybean	cytosol	19.68	32.19
KRH39004	Soybean	cytosol	19.43	31.79
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.57	31.66
KRH39112	Soybean	cytosol	19.19	31.39
PGSC0003DMT400052977	Potato	cytosol	14.88	31.11
KRH39057	Soybean	cytosol	18.94	30.99
Solyc06g007810.1.1	Tomato	cytosol	10.21	30.97
KRH40513	Soybean	plastid	13.28	30.77
Bra026882.1-P	Field mustard	cytosol	20.05	30.52
KRH39072	Soybean	cytosol	18.57	30.44
Bra027636.1-P	Field mustard	cytosol	12.05	30.25
KRH09084	Soybean	plastid	18.82	29.94
Solyc06g005220.2.1	Tomato	cytosol	14.88	29.8
KRH17148	Soybean	mitochondrion	19.93	29.72
KRH09154	Soybean	mitochondrion	20.3	29.68
Bra006187.1-P	Field mustard	plastid	10.58	29.55
VIT_14s0081g00120.t01	Wine grape	plastid	21.16	29.5
AT1G63330.2	Thale cress	cytosol	20.17	29.34
KRH08636	Soybean	cytosol	18.82	29.31
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.2	29.31
PGSC0003DMT400008759	Potato	cytosol	11.44	29.15
KRH41817	Soybean	mitochondrion	19.8	29.01
Bra026884.1-P	Field mustard	cytosol	16.36	28.98
AT5G16640.1	Thale cress	mitochondrion	17.96	28.97
KRH39066	Soybean	cytosol	19.68	28.83
KRH08628	Soybean	plastid	19.56	28.8
KRH48615	Soybean	mitochondrion	19.19	28.62
VIT_14s0081g00270.t01	Wine grape	plastid	20.42	28.62
KRH08671	Soybean	cytosol, mitochondrion	19.43	28.57
KRH08639	Soybean	mitochondrion, plastid	19.8	28.5
Bra027029.1-P	Field mustard	mitochondrion	8.49	28.4
KRH08277	Soybean	plastid	19.8	28.4
KRH39050	Soybean	mitochondrion	18.57	28.38
KRH08607	Soybean	cytosol	19.56	28.34
PGSC0003DMT400008757	Potato	cytosol	17.34	28.31
AT1G62670.1	Thale cress	mitochondrion	21.77	28.1
KRH40400	Soybean	plastid	19.93	28.08
Solyc06g007740.1.1	Tomato	cytosol	20.3	27.97
PGSC0003DMT400025074	Potato	cytosol	18.94	27.9
Bra036649.1-P	Field mustard	cytosol	13.41	27.88
PGSC0003DMT400053185	Potato	mitochondrion	20.17	27.8
AT1G63400.1	Thale cress	cytosol, plastid	19.68	27.73
KRH09082	Soybean	cytosol	13.9	27.7
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.85	27.68
VIT_14s0030g02280.t01	Wine grape	plastid	19.07	27.63
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.03	27.54
PGSC0003DMT400025067	Potato	cytosol	16.11	27.52
AT1G62930.1	Thale cress	plastid	21.28	27.5
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.91	27.46
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.11	27.46
KRH08625	Soybean	plastid	19.43	27.43
KRH25652	Soybean	cytosol, golgi	18.2	27.41
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.53	27.39
AT1G63080.3	Thale cress	mitochondrion	20.66	27.36
AT1G63130.1	Thale cress	mitochondrion	21.16	27.3
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.59	27.24
KRH09121	Soybean	mitochondrion	17.84	27.15
PGSC0003DMT400056665	Potato	mitochondrion	19.56	26.99
AT1G62590.1	Thale cress	mitochondrion	21.03	26.97
AT1G63150.1	Thale cress	mitochondrion	20.79	26.87
KRH31646	Soybean	cytosol	17.1	26.83
Bra036651.1-P	Field mustard	mitochondrion	17.59	26.73
Bra026971.1-P	Field mustard	mitochondrion	20.66	26.71
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.84	26.7
PGSC0003DMT400056663	Potato	plastid	19.31	26.7
Solyc06g007300.1.1	Tomato	extracellular	19.43	26.69
AT1G63070.1	Thale cress	mitochondrion	19.31	26.61
PGSC0003DMT400052971	Potato	mitochondrion	19.31	26.48
AT1G62910.1	Thale cress	mitochondrion	20.54	26.42
AT1G64580.1	Thale cress	mitochondrion	16.97	26.39
AT1G12300.1	Thale cress	mitochondrion	20.66	26.37
Bra026954.1-P	Field mustard	mitochondrion	21.03	26.31
Bra027026.1-P	Field mustard	mitochondrion	16.85	26.2
Bra021192.1-P	Field mustard	plastid	16.24	26.19
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.66	26.09
CDX68679	Canola	cytosol	3.69	26.09
Bra026958.1-P	Field mustard	mitochondrion	20.42	26.06
PGSC0003DMT400053182	Potato	cytosol	19.19	26.04
Bra016762.1-P	Field mustard	mitochondrion	19.43	26.03
PGSC0003DMT400008760	Potato	mitochondrion	18.7	25.94
Bra028267.1-P	Field mustard	mitochondrion	19.93	25.88
Bra031731.1-P	Field mustard	mitochondrion	15.99	25.59
AT1G62914.1	Thale cress	mitochondrion	16.61	25.57
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.38	25.46
AT1G12700.2	Thale cress	cytosol	19.31	25.4
KRH09095	Soybean	plastid	18.2	25.3
AT1G64583.1	Thale cress	mitochondrion	15.87	25.2
Solyc04g080120.1.1	Tomato	extracellular	18.94	25.16
AT3G16710.1	Thale cress	mitochondrion	15.62	25.05
AT5G41170.1	Thale cress	mitochondrion	16.11	24.86
PGSC0003DMT400053556	Potato	mitochondrion	14.02	24.84
AT1G62720.1	Thale cress	mitochondrion	14.76	24.74
Bra026957.1-P	Field mustard	mitochondrion	18.33	24.71
KRH09097	Soybean	plastid	17.71	24.7
AT1G62680.2	Thale cress	plastid	16.61	24.64
PGSC0003DMT400015293	Potato	mitochondrion	18.33	24.43
PGSC0003DMT400015298	Potato	mitochondrion	18.33	24.43
AT1G06580.1	Thale cress	mitochondrion	14.88	24.2
Bra026401.1-P	Field mustard	plastid	15.5	23.55
VIT_14s0030g02260.t01	Wine grape	cytosol	12.79	23.48
KRH08599	Soybean	cytosol, plastid	19.19	23.32
AT4G26800.2	Thale cress	mitochondrion, plastid	14.27	22.57
Bra027726.1-P	Field mustard	mitochondrion	12.92	22.29
AT1G64100.2	Thale cress	cytosol	21.89	22.08
KRH09085	Soybean	mitochondrion	18.08	20.88
Bra027656.1-P	Field mustard	cytosol	22.88	19.77
KRH12873	Soybean	cytosol	16.61	19.4
KRH39064	Soybean	cytosol	20.91	17.54
Bra016758.1-P	Field mustard	plastid	20.17	14.15

Protein Annotations

EnsemblPlants:TraesCS1A01G067600.1	EnsemblPlantsGene:TraesCS1A01G067600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:49346779..49349220

Molecular Weight (calculated)

89185.5 Da

IEP (calculated)

8.152

GRAVY (calculated)

0.025

Length

813 amino acids

Sequence
(BLAST)

001: MSGVCLRRRL SSTSTSNTPP SPSWSPQAAF AAATERARAG TLSPQDAHHL FDELFRQATP VPERSLEGFL AALGRAASSE ACRDGPSLAL TLFNRLCREE
101: AGRRVAPPTI YTYGILMNCC CRVRRPDLGL AFFGRLLRTG LKTNEVVAST LLKCLCCAKR ADEAVNVLLH RMSVLGCVPN SFSYNIVLKS LCDDSRSQRA
201: LGLLQMMAKG GVCSPNVLSY NTVIHGFFKE GEIDKACNLF HEMTKQGFVP NVVTYNSVIN ALCKARAMDN AESFLRQMVD NGVPPDKVTY TSIIHGYSTL
301: GRWKEATKMF REMTSRGLIP DIVTRNSFMD SLCKHGRSKE AAEIFFSMAA RGHKPDIVSY TILLHGYGNE GSFSDMMSLF NSMEGGGIVA DCQVFNILID
401: AYAKRGMIDE AMLIFTEMLG QGVNPSVVTY STLIAALCRT GRLADAMDKF SQMVGTGVQP DTVVYHSLIQ GFCTHGDLVK AKELISEMMN KGIICPNIAF
501: FNSIVDSLCK EGRVMDAHHI FDLVKDIGEK PDAIMFNTLI DGYCLVGEMG KAFMVLDVMT SAGIEPDAIT YSTLVSGYCK SGRIDDGLIL FREEMLHKKV
601: KPTIVTYNII LEGLFRAGRT VAAKKMLHEI IGSGTPVSMH TYDIFLRGLC RNNCADEAIV LFQKSRAMNV KFNITTLNTM INAFYKGDRR EEANDLFAAL
701: PASGLVPNAS TYGVMIQNLL KEGAVEEADN MFSSMEKSGC APSSRLVNDV IRTLLEKGEI VKAGKYMSKV YGKSLSLDAS TSSLLLSLFS GNGKYREQIQ
801: LLPAKYQFFG GIS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.