Factsheet for TraesCS2A01G531000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G560300.1	Wheat	cytosol	73.93	88.22
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	66.13	87.87
TraesCS2B01G559900.1	Wheat	cytosol	69.81	87.45
TraesCS2A01G531100.1	Wheat	cytosol	71.28	85.06
TraesCS7B01G469500.1	Wheat	cytosol	70.4	85.05
TraesCS2A01G526200.1	Wheat	golgi	84.83	84.58
TraesCS2B01G560700.1	Wheat	plastid	87.92	77.43
TraesCS2A01G530600.1	Wheat	cytosol	86.89	77.12
TraesCS1A01G031600.1	Wheat	cytosol	56.7	58.16
TraesCS1A01G056000.1	Wheat	cytosol	32.11	54.23
TraesCS1A01G055600.1	Wheat	cytosol	25.63	53.54
TraesCS1A01G067700.1	Wheat	extracellular	26.21	52.82
TraesCS1A01G054800.1	Wheat	cytosol	45.21	52.75
TraesCS1A01G073700.1	Wheat	cytosol	29.9	52.73
TraesCS1A01G067800.1	Wheat	cytosol	28.72	52.14
TraesCS1A01G067000.1	Wheat	mitochondrion	53.76	50.98
TraesCS1A01G057300.1	Wheat	cytosol	53.31	50.42
TraesCS1A01G073600.1	Wheat	mitochondrion	28.28	48.98
TraesCS1A01G054500.1	Wheat	mitochondrion	55.52	48.33
TraesCS1A01G067600.1	Wheat	mitochondrion	57.73	48.22
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	26.8	48.15
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	50.52	47.84
TraesCS1A01G067400.1	Wheat	mitochondrion	58.03	47.76
TraesCS6A01G014600.1	Wheat	cytosol	27.54	47.34
TraesCS1A01G031700.1	Wheat	plastid	51.55	47.23
TraesCS1A01G054700.2	Wheat	mitochondrion	55.52	46.43
TraesCS1A01G055800.1	Wheat	mitochondrion	51.84	45.66
TraesCS6A01G311600.1	Wheat	mitochondrion	55.96	45.45
TraesCS6A01G083000.1	Wheat	cytosol	28.13	41.89
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	43.89	41.74
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.6	39.96
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	28.28	39.67
TraesCS1A01G073800.1	Wheat	mitochondrion	18.56	37.84
TraesCS6A01G015000.1	Wheat	mitochondrion	21.8	35.66
Solyc06g007280.2.1	Tomato	cytosol	12.08	32.16
PGSC0003DMT400052977	Potato	cytosol	17.82	31.11
VIT_14s0081g00110.t01	Wine grape	cytosol	21.65	29.94
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.62	29.35
KRH39054	Soybean	cytosol	21.35	29.18
Bra036649.1-P	Field mustard	cytosol	16.79	29.16
KRH39112	Soybean	cytosol	21.21	28.97
KRH40513	Soybean	plastid	14.87	28.77
Bra027636.1-P	Field mustard	cytosol	13.7	28.7
KRH39074	Soybean	cytosol	20.91	28.57
Solyc06g005220.2.1	Tomato	cytosol	17.08	28.57
KRH39004	Soybean	cytosol	20.77	28.37
KRH39057	Soybean	cytosol	20.77	28.37
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.06	28.32
TraesCS1A01G074000.1	Wheat	mitochondrion	11.78	28.27
KRH39072	Soybean	cytosol	20.47	28.02
PGSC0003DMT400008759	Potato	cytosol	12.81	27.27
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	10.16	27.27
KRH08636	Soybean	cytosol	20.91	27.2
TraesCS1A01G055500.1	Wheat	mitochondrion	8.69	27.19
Solyc06g007810.1.1	Tomato	cytosol	10.6	26.87
Bra027029.1-P	Field mustard	mitochondrion	9.57	26.75
KRH17148	Soybean	mitochondrion	21.35	26.61
KRH09082	Soybean	cytosol	15.91	26.47
Bra006187.1-P	Field mustard	plastid	11.34	26.46
KRH08277	Soybean	plastid	22.09	26.45
AT5G16640.1	Thale cress	mitochondrion	19.59	26.39
KRH25652	Soybean	cytosol, golgi	20.91	26.3
KRH31646	Soybean	cytosol	20.03	26.25
VIT_14s0081g00120.t01	Wine grape	plastid	22.53	26.24
TraesCS1A01G066600.1	Wheat	mitochondrion	10.16	26.24
KRH09084	Soybean	plastid	19.73	26.22
CDX68679	Canola	cytosol	4.42	26.09
VIT_14s0081g00270.t01	Wine grape	plastid	22.24	26.03
KRH39050	Soybean	mitochondrion	20.32	25.94
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.88	25.71
PGSC0003DMT400025067	Potato	cytosol	17.97	25.63
KRH39066	Soybean	cytosol	20.91	25.59
KRH08628	Soybean	plastid	20.77	25.54
KRH48615	Soybean	mitochondrion	20.47	25.5
KRH08607	Soybean	cytosol	21.06	25.49
KRH08639	Soybean	mitochondrion, plastid	21.21	25.49
KRH40400	Soybean	plastid	21.5	25.3
KRH09121	Soybean	mitochondrion	19.88	25.28
KRH08671	Soybean	cytosol, mitochondrion	20.47	25.14
Bra026882.1-P	Field mustard	cytosol	19.73	25.09
KRH08625	Soybean	plastid	21.21	25.0
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.11	24.85
AT1G63330.2	Thale cress	cytosol	20.32	24.69
KRH09154	Soybean	mitochondrion	20.18	24.64
PGSC0003DMT400008757	Potato	cytosol	17.97	24.5
Bra026884.1-P	Field mustard	cytosol	16.49	24.4
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.83	24.26
Solyc06g007740.1.1	Tomato	cytosol	20.91	24.07
AT1G64583.1	Thale cress	mitochondrion	18.11	24.02
KRH41817	Soybean	mitochondrion	19.59	23.96
VIT_14s0030g02280.t01	Wine grape	plastid	19.73	23.89
Bra036651.1-P	Field mustard	mitochondrion	18.7	23.74
AT1G64580.1	Thale cress	mitochondrion	18.26	23.71
AT3G16710.1	Thale cress	mitochondrion	17.67	23.67
AT1G62670.1	Thale cress	mitochondrion	21.94	23.65
Solyc06g007300.1.1	Tomato	extracellular	20.62	23.65
AT1G63130.1	Thale cress	mitochondrion	21.8	23.49
AT1G63080.3	Thale cress	mitochondrion	21.21	23.45
AT1G06580.1	Thale cress	mitochondrion	17.23	23.4
PGSC0003DMT400053185	Potato	mitochondrion	20.32	23.39
PGSC0003DMT400025074	Potato	cytosol	19.0	23.37
Bra027026.1-P	Field mustard	mitochondrion	17.97	23.33
AT1G62720.1	Thale cress	mitochondrion	16.64	23.3
PGSC0003DMT400052971	Potato	mitochondrion	20.32	23.27
Bra021192.1-P	Field mustard	plastid	17.23	23.21
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.2	23.06
AT1G63400.1	Thale cress	cytosol, plastid	19.59	23.05
AT1G62680.2	Thale cress	plastid	18.56	22.99
AT1G62930.1	Thale cress	plastid	21.21	22.89
AT1G63070.1	Thale cress	mitochondrion	19.88	22.88
KRH09097	Soybean	plastid	19.59	22.81
PGSC0003DMT400015293	Potato	mitochondrion	20.47	22.79
PGSC0003DMT400015298	Potato	mitochondrion	20.47	22.79
AT1G63150.1	Thale cress	mitochondrion	21.06	22.73
Solyc04g080120.1.1	Tomato	extracellular	20.47	22.71
AT1G62914.1	Thale cress	mitochondrion	17.53	22.54
Bra031731.1-P	Field mustard	mitochondrion	16.79	22.44
Bra026971.1-P	Field mustard	mitochondrion	20.77	22.42
KRH09095	Soybean	plastid	19.29	22.39
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.47	22.38
AT1G62910.1	Thale cress	mitochondrion	20.77	22.31
AT1G12300.1	Thale cress	mitochondrion	20.91	22.29
PGSC0003DMT400056665	Potato	mitochondrion	19.15	22.07
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.03	21.97
PGSC0003DMT400056663	Potato	plastid	19.0	21.94
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.53	21.92
AT5G41170.1	Thale cress	mitochondrion	16.94	21.82
AT1G62590.1	Thale cress	mitochondrion	20.18	21.61
PGSC0003DMT400053556	Potato	mitochondrion	14.58	21.57
Bra028267.1-P	Field mustard	mitochondrion	19.88	21.57
PGSC0003DMT400008760	Potato	mitochondrion	18.56	21.5
Bra026958.1-P	Field mustard	mitochondrion	20.03	21.35
Bra016762.1-P	Field mustard	mitochondrion	19.0	21.25
KRH08599	Soybean	cytosol, plastid	20.91	21.23
VIT_14s0030g02260.t01	Wine grape	cytosol	13.84	21.22
PGSC0003DMT400053182	Potato	cytosol	18.56	21.04
Bra026401.1-P	Field mustard	plastid	16.35	20.75
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.59	20.65
Bra026957.1-P	Field mustard	mitochondrion	18.26	20.56
AT1G12700.2	Thale cress	cytosol	18.56	20.39
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.58	20.16
Bra026954.1-P	Field mustard	mitochondrion	19.29	20.15
AT4G26800.2	Thale cress	mitochondrion, plastid	15.17	20.04
Bra027726.1-P	Field mustard	mitochondrion	13.11	18.9
KRH09085	Soybean	mitochondrion	19.44	18.75
AT1G64100.2	Thale cress	cytosol	21.5	18.11
KRH12873	Soybean	cytosol	18.41	17.96
Bra027656.1-P	Field mustard	cytosol	23.12	16.68
KRH39064	Soybean	cytosol	21.65	15.17
Bra016758.1-P	Field mustard	plastid	19.29	11.3

Protein Annotations

EnsemblPlants:TraesCS2A01G531000.1	EnsemblPlantsGene:TraesCS2A01G531000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF874	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2A:-:748452932..748458280

Molecular Weight (calculated)

75406.9 Da

IEP (calculated)

8.134

GRAVY (calculated)

0.131

Length

679 amino acids

Sequence
(BLAST)

001: MSRGAGARVA SPTLCTYSIL MDCCCRVGRP DLVLAFFGRL LRLGLRLDII SSSNLLKGLC QAKRSNEALD MLLHRMPELD CVPDVFSYSI VINGCFKQGE
101: VDKACNLFHQ MPQLGVQPNV VIYNSVIDAL SKSGAMDKAE VVLRQMVDQG IEPNIKTYNC LIHGYSTFGQ WKEALRVFKE MASLGVVPDV VTLTSLIDSL
201: CKHRRTKEAR EIFDSMAAKG LKPNIVSYST MLNGYVKEGS FEDMTDLFNS MVRNGVVPNH HIFNILINAY AKRGLMDEAM HMFEVMRQQG VNPDVVDYLV
301: IMDSLCKMGR MDAAVDKFNQ MVNQGVSPNK AVYQCLVLGS CSHGHFVKAK DLISEAINRG LFSNSVFFYP VINDLCKEGK VNEAQDMFDF ILGIGRRPDV
401: IMYNSLMDGY CLVGKVEEAL RVLDAMKSAG LQPTAVTYAI LLNGYCKIGR IADGLSLFRE MSLSGVKPTT FMYNIIFDGL FRSGRAVSAK EKFRTMTESG
501: IPVGVDTYNI VLHGLCKNNC TGEAIELFKK LRAMNVKIDV ITLNTMISVM FKTRRIEEAK DLFATISAIR LVPSVVTYSV MMTNFIEEGL LAEADDMFLA
601: MEKAGCAPDS RLLNHVVRVL LENGAVVKAA TYLAKLDAKQ LSVEASTVSL ILSLFSRKGK LREHVKLLPV KYQPPEMLD

Best Arabidopsis Sequence Match ( AT1G62930.1 )
(BLAST)

001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62930, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.