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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 1
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G055600.1 Wheat cytosol 41.07 73.54
TraesCS1D01G055500.1 Wheat cytosol, mitochondrion 78.69 68.05
TraesCS1A01G056000.1 Wheat cytosol 46.56 67.41
TraesCS1B01G072400.1 Wheat cytosol 80.24 67.19
TraesCS1A01G073700.1 Wheat cytosol 42.44 64.16
TraesCS1A01G067800.1 Wheat cytosol 39.35 61.23
TraesCS1A01G073600.1 Wheat mitochondrion 38.66 57.4
TraesCS1A01G054500.1 Wheat mitochondrion 75.6 56.41
TraesCS1A01G055800.1 Wheat mitochondrion 73.37 55.38
TraesCS1D01G056200.1 Wheat mitochondrion 78.35 55.27
TraesCS1A01G057300.1 Wheat cytosol 67.87 55.01
TraesCS1A01G054700.2 Wheat mitochondrion 76.12 54.56
TraesCS1A01G067000.1 Wheat mitochondrion 67.01 54.47
TraesCS1B01G072900.2 Wheat mitochondrion 80.93 53.95
TraesCS2A01G531100.1 Wheat cytosol 50.69 51.85
TraesCS1A01G057400.1 Wheat mitochondrion, plastid 63.75 51.74
TraesCS1A01G031600.1 Wheat cytosol 58.25 51.21
TraesCS1A01G067600.1 Wheat mitochondrion 70.27 50.31
TraesCS1A01G067700.1 Wheat extracellular 28.69 49.55
TraesCS1A01G067400.1 Wheat mitochondrion 69.07 48.73
KXG35774 Sorghum cytosol, mitochondrion 38.66 47.57
TraesCS6A01G311600.1 Wheat mitochondrion 68.04 47.37
TraesCS2A01G531000.1 Wheat golgi 52.75 45.21
TraesCS2A01G526200.1 Wheat golgi 52.41 44.79
TraesCS6A01G099100.1 Wheat cytosol, mitochondrion 27.66 42.59
TraesCS2A01G530300.1 Wheat mitochondrion, plastid 37.11 42.27
TraesCS6A01G014600.1 Wheat cytosol 27.84 41.01
KXG28799 Sorghum plastid 53.09 40.66
TraesCS2A01G530600.1 Wheat cytosol 53.09 40.39
TraesCS1A01G031700.1 Wheat plastid 51.37 40.35
Os04t0350000-02 Rice cytosol, mitochondrion, plastid 52.58 39.95
Zm00001d007534_P001 Maize plastid 53.26 39.9
Zm00001d007548_P001 Maize plastid 55.15 39.43
Zm00001d007555_P001 Maize plastid 55.15 39.43
Zm00001d007531_P001 Maize plastid 54.81 39.19
Zm00001d007559_P001 Maize plastid 54.98 39.17
TraesCS6A01G083000.1 Wheat cytosol 30.24 38.6
Os04t0351333-00 Rice cytosol 54.3 35.95
TraesCS6A01G099300.1 Wheat cytosol, mitochondrion 28.52 34.3
TraesCS6A01G014800.1 Wheat cytosol, mitochondrion 41.92 34.17
TraesCS6A01G101100.1 Wheat mitochondrion, plastid 27.49 31.81
Solyc06g007280.2.1 Tomato cytosol 13.4 30.59
TraesCS1A01G073800.1 Wheat mitochondrion 17.01 29.73
PGSC0003DMT400052977 Potato cytosol 19.07 28.53
TraesCS6A01G015000.1 Wheat mitochondrion 20.27 28.43
Os04t0349600-01 Rice plastid 18.04 27.13
Solyc06g005220.2.1 Tomato cytosol 18.73 26.85
VIT_14s0081g00110.t01 Wine grape cytosol 22.34 26.48
PGSC0003DMT400008759 Potato cytosol 14.43 26.33
Solyc06g007810.1.1 Tomato cytosol 12.03 26.12
Bra027636.1-P Field mustard cytosol 14.26 25.62
KRH39004 Soybean cytosol 21.65 25.35
KRH39054 Soybean cytosol 21.65 25.35
KRH39074 Soybean cytosol 21.65 25.35
KRH39072 Soybean cytosol 21.13 24.8
KRH09082 Soybean cytosol 17.35 24.75
KRH39057 Soybean cytosol 21.13 24.75
Bra026884.1-P Field mustard cytosol 19.42 24.62
KRH39112 Soybean cytosol 20.62 24.14
VIT_12s0028g02320.t01 Wine grape mitochondrion 19.42 23.69
PGSC0003DMT400025067 Potato cytosol 19.07 23.32
KRH08635 Soybean cytosol, golgi, mitochondrion, plastid 20.1 23.17
KRH39066 Soybean cytosol 21.82 22.88
KRH09084 Soybean plastid 19.93 22.7
Bra006187.1-P Field mustard plastid 11.34 22.68
KRH08636 Soybean cytosol 20.27 22.61
PGSC0003DMT400008757 Potato cytosol 19.24 22.49
PGSC0003DMT400025087 Potato endoplasmic reticulum 19.07 22.42
Bra027029.1-P Field mustard mitochondrion 9.28 22.22
KRH25652 Soybean cytosol, golgi 20.62 22.22
KRH48615 Soybean mitochondrion 20.79 22.2
KRH08607 Soybean cytosol 21.31 22.1
VIT_14s0081g00120.t01 Wine grape plastid 21.99 21.96
KRH08671 Soybean cytosol, mitochondrion 20.79 21.88
KRH17148 Soybean mitochondrion 20.27 21.65
KRH09154 Soybean mitochondrion 20.62 21.58
KRH08628 Soybean plastid 20.45 21.56
PGSC0003DMT400025074 Potato cytosol 20.45 21.56
KRH40400 Soybean plastid 21.31 21.49
KRH08639 Soybean mitochondrion, plastid 20.62 21.24
Solyc06g007740.1.1 Tomato cytosol 21.48 21.19
KRH41817 Soybean mitochondrion 20.1 21.08
PGSC0003DMT400056665 Potato mitochondrion 21.31 21.05
KRH08277 Soybean plastid 20.45 20.99
Bra036649.1-P Field mustard cytosol 14.09 20.97
AT1G63330.2 Thale cress cytosol 20.1 20.93
CDX68679 Canola cytosol 4.12 20.87
KRH09121 Soybean mitochondrion 19.07 20.79
VIT_14s0081g00270.t01 Wine grape plastid 20.62 20.69
KRH08625 Soybean plastid 20.45 20.66
AT5G16640.1 Thale cress mitochondrion 17.87 20.63
PGSC0003DMT400052971 Potato mitochondrion 20.96 20.57
KRH00678 Soybean endoplasmic reticulum, extracellular, plastid 18.56 20.57
VIT_14s0030g02260.t01 Wine grape cytosol 15.64 20.54
Bra031731.1-P Field mustard mitochondrion 17.87 20.47
PGSC0003DMT400053185 Potato mitochondrion 20.62 20.34
Solyc06g007300.1.1 Tomato extracellular 20.62 20.27
KRH40513 Soybean plastid 12.2 20.23
PGSC0003DMT400056663 Potato plastid 20.27 20.07
VIT_14s0081g00280.t01 Wine grape mitochondrion 21.99 20.03
PGSC0003DMT400008760 Potato mitochondrion 20.1 19.97
Bra026882.1-P Field mustard cytosol 18.04 19.66
AT1G62670.1 Thale cress mitochondrion 21.13 19.52
AT1G63070.1 Thale cress mitochondrion 19.59 19.32
VIT_14s0030g02280.t01 Wine grape plastid 18.56 19.25
KRH09097 Soybean plastid 19.24 19.21
Bra027658.1-P Field mustard cytosol, mitochondrion 17.87 19.15
KRH08599 Soybean cytosol, plastid 21.99 19.13
KRH31646 Soybean cytosol 17.01 19.11
AT3G22470.1 Thale cress cytosol, mitochondrion 20.27 19.06
AT1G63080.3 Thale cress mitochondrion 20.1 19.06
PGSC0003DMT400053182 Potato cytosol 19.59 19.03
Solyc04g080120.1.1 Tomato extracellular 19.93 18.95
KRH39050 Soybean mitochondrion 17.18 18.8
AT1G62930.1 Thale cress plastid 20.27 18.76
AT1G63130.1 Thale cress mitochondrion 20.27 18.73
AT1G12620.1 Thale cress cytosol, mitochondrion 19.93 18.68
Bra026971.1-P Field mustard mitochondrion 20.1 18.6
AT1G12300.1 Thale cress mitochondrion 20.27 18.52
AT1G12775.1 Thale cress cytosol, mitochondrion 20.45 18.48
AT1G62590.1 Thale cress mitochondrion 20.1 18.45
PGSC0003DMT400015293 Potato mitochondrion 19.24 18.36
PGSC0003DMT400015298 Potato mitochondrion 19.24 18.36
AT1G62910.1 Thale cress mitochondrion 19.93 18.35
Bra026954.1-P Field mustard mitochondrion 20.45 18.31
KRH09095 Soybean plastid 18.38 18.29
Bra026958.1-P Field mustard mitochondrion 19.93 18.21
Bra026957.1-P Field mustard mitochondrion 18.56 17.91
Bra028267.1-P Field mustard mitochondrion 19.24 17.89
AT1G63400.1 Thale cress cytosol, plastid 17.7 17.85
Bra025516.1-P Field mustard cytosol, mitochondrion 14.6 17.82
AT1G12700.2 Thale cress cytosol 18.9 17.8
TraesCS6A01G014500.1 Wheat cytosol, mitochondrion 7.73 17.79
Bra016762.1-P Field mustard mitochondrion 18.38 17.63
AT1G62680.2 Thale cress plastid 16.49 17.52
Bra036651.1-P Field mustard mitochondrion 15.98 17.38
AT1G64583.1 Thale cress mitochondrion 15.29 17.38
AT3G16710.1 Thale cress mitochondrion 15.12 17.36
Bra026836.1-P Field mustard cytosol, mitochondrion 14.6 17.31
AT1G63150.1 Thale cress mitochondrion 18.56 17.17
AT1G06580.1 Thale cress mitochondrion 14.6 17.0
AT1G62720.1 Thale cress mitochondrion 14.09 16.91
PGSC0003DMT400053556 Potato mitochondrion 13.23 16.78
Bra021192.1-P Field mustard plastid 14.43 16.67
AT1G64580.1 Thale cress mitochondrion 14.95 16.63
AT1G64100.2 Thale cress cytosol 22.68 16.38
AT5G41170.1 Thale cress mitochondrion 14.78 16.32
KRH12873 Soybean cytosol 19.24 16.09
Bra027026.1-P Field mustard mitochondrion 14.43 16.06
KRH09085 Soybean mitochondrion 19.42 16.05
Bra026401.1-P Field mustard plastid 14.09 15.33
AT4G26800.2 Thale cress mitochondrion, plastid 13.23 14.98
AT1G62914.1 Thale cress mitochondrion 13.57 14.96
TraesCS1A01G074000.1 Wheat mitochondrion 7.04 14.49
TraesCS1A01G066600.1 Wheat mitochondrion 6.36 14.07
Bra027656.1-P Field mustard cytosol 22.34 13.82
Bra027726.1-P Field mustard mitochondrion 11.0 13.59
KRH39064 Soybean cytosol 21.99 13.21
Bra016758.1-P Field mustard plastid 19.76 9.92
TraesCS1A01G055500.1 Wheat mitochondrion 1.2 3.23
Protein Annotations
EnsemblPlants:TraesCS1A01G054800.1EnsemblPlantsGene:TraesCS1A01G054800Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR44149PANTHER:PTHR44149:SF3
PFAM:PF01535PFAM:PF12854PFAM:PF13041PFscan:PS51375TIGRFAMs:TIGR00756MapMan:35.1
Description
No Description!
Coordinates
chr1A:-:36259368..36261215
Molecular Weight (calculated)
64537.2 Da
IEP (calculated)
7.444
GRAVY (calculated)
0.073
Length
582 amino acids
Sequence
(BLAST)
001: MLQMMAKEGG VCFPNVVAYS TVIHGFFKEG ETGKACNLFH EMMQQGLVPD VVTYNSIIDA LCKARAMDKA ELVLRQMVAN GAQPDTVTYN CMINGYATSG
101: RLKESAKMFR EMKSRGLMPD IVTCNSFLSS LCKHGRSKEA AEFFDSMTAK GHKPDIVSCR ILLHGYATEG CFADMIDLFN SVGSNGIAAD CRVFKILINR
201: YAKRGMTDEA MLIFTEMRGQ GVSPNVVTYS IVIAALSRKL SRMGRLTDAM DKFDQMVALG VQPDRSIYQS LIQGFFMHGG LVKAKELVSQ MINKGIPRPD
301: IVFFNSVINS MCKEGRVMDA HDIFDLVIDI VGVEPDVITY NTLVNGYCRN GRIDDGLALF REMPHKRIKP DTVTYDIILN GLFHSGSTVA ARKMFHEMIE
401: SGITVSIPTY GIIIAGFCRN NCAEEAIDLF HKLSAMNVKF DIAIHNTMIN AIFKVGRREE AKDLFAAISP SGLVPTESTY AVMITNLLED GVVEEADNMF
501: SSMEKSGIIP SSRLLNCIIR MLLEKGEIAK AGNYLSKVDG KSILLEASTT LLMLSLFSKK GKYREDMKLL PAKYQFFMDL VD
Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)
001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.