Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G137900.1 | |
TraesCS4B01G148100.1 | |
TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G055600.1 | Wheat | cytosol | 41.07 | 73.54 |
TraesCS1D01G055500.1 | Wheat | cytosol, mitochondrion | 78.69 | 68.05 |
TraesCS1A01G056000.1 | Wheat | cytosol | 46.56 | 67.41 |
TraesCS1B01G072400.1 | Wheat | cytosol | 80.24 | 67.19 |
TraesCS1A01G073700.1 | Wheat | cytosol | 42.44 | 64.16 |
TraesCS1A01G067800.1 | Wheat | cytosol | 39.35 | 61.23 |
TraesCS1A01G073600.1 | Wheat | mitochondrion | 38.66 | 57.4 |
TraesCS1A01G054500.1 | Wheat | mitochondrion | 75.6 | 56.41 |
TraesCS1A01G055800.1 | Wheat | mitochondrion | 73.37 | 55.38 |
TraesCS1D01G056200.1 | Wheat | mitochondrion | 78.35 | 55.27 |
TraesCS1A01G057300.1 | Wheat | cytosol | 67.87 | 55.01 |
TraesCS1A01G054700.2 | Wheat | mitochondrion | 76.12 | 54.56 |
TraesCS1A01G067000.1 | Wheat | mitochondrion | 67.01 | 54.47 |
TraesCS1B01G072900.2 | Wheat | mitochondrion | 80.93 | 53.95 |
TraesCS2A01G531100.1 | Wheat | cytosol | 50.69 | 51.85 |
TraesCS1A01G057400.1 | Wheat | mitochondrion, plastid | 63.75 | 51.74 |
TraesCS1A01G031600.1 | Wheat | cytosol | 58.25 | 51.21 |
TraesCS1A01G067600.1 | Wheat | mitochondrion | 70.27 | 50.31 |
TraesCS1A01G067700.1 | Wheat | extracellular | 28.69 | 49.55 |
TraesCS1A01G067400.1 | Wheat | mitochondrion | 69.07 | 48.73 |
KXG35774 | Sorghum | cytosol, mitochondrion | 38.66 | 47.57 |
TraesCS6A01G311600.1 | Wheat | mitochondrion | 68.04 | 47.37 |
TraesCS2A01G531000.1 | Wheat | golgi | 52.75 | 45.21 |
TraesCS2A01G526200.1 | Wheat | golgi | 52.41 | 44.79 |
TraesCS6A01G099100.1 | Wheat | cytosol, mitochondrion | 27.66 | 42.59 |
TraesCS2A01G530300.1 | Wheat | mitochondrion, plastid | 37.11 | 42.27 |
TraesCS6A01G014600.1 | Wheat | cytosol | 27.84 | 41.01 |
KXG28799 | Sorghum | plastid | 53.09 | 40.66 |
TraesCS2A01G530600.1 | Wheat | cytosol | 53.09 | 40.39 |
TraesCS1A01G031700.1 | Wheat | plastid | 51.37 | 40.35 |
Os04t0350000-02 | Rice | cytosol, mitochondrion, plastid | 52.58 | 39.95 |
Zm00001d007534_P001 | Maize | plastid | 53.26 | 39.9 |
Zm00001d007548_P001 | Maize | plastid | 55.15 | 39.43 |
Zm00001d007555_P001 | Maize | plastid | 55.15 | 39.43 |
Zm00001d007531_P001 | Maize | plastid | 54.81 | 39.19 |
Zm00001d007559_P001 | Maize | plastid | 54.98 | 39.17 |
TraesCS6A01G083000.1 | Wheat | cytosol | 30.24 | 38.6 |
Os04t0351333-00 | Rice | cytosol | 54.3 | 35.95 |
TraesCS6A01G099300.1 | Wheat | cytosol, mitochondrion | 28.52 | 34.3 |
TraesCS6A01G014800.1 | Wheat | cytosol, mitochondrion | 41.92 | 34.17 |
TraesCS6A01G101100.1 | Wheat | mitochondrion, plastid | 27.49 | 31.81 |
Solyc06g007280.2.1 | Tomato | cytosol | 13.4 | 30.59 |
TraesCS1A01G073800.1 | Wheat | mitochondrion | 17.01 | 29.73 |
PGSC0003DMT400052977 | Potato | cytosol | 19.07 | 28.53 |
TraesCS6A01G015000.1 | Wheat | mitochondrion | 20.27 | 28.43 |
Os04t0349600-01 | Rice | plastid | 18.04 | 27.13 |
Solyc06g005220.2.1 | Tomato | cytosol | 18.73 | 26.85 |
VIT_14s0081g00110.t01 | Wine grape | cytosol | 22.34 | 26.48 |
PGSC0003DMT400008759 | Potato | cytosol | 14.43 | 26.33 |
Solyc06g007810.1.1 | Tomato | cytosol | 12.03 | 26.12 |
Bra027636.1-P | Field mustard | cytosol | 14.26 | 25.62 |
KRH39004 | Soybean | cytosol | 21.65 | 25.35 |
KRH39054 | Soybean | cytosol | 21.65 | 25.35 |
KRH39074 | Soybean | cytosol | 21.65 | 25.35 |
KRH39072 | Soybean | cytosol | 21.13 | 24.8 |
KRH09082 | Soybean | cytosol | 17.35 | 24.75 |
KRH39057 | Soybean | cytosol | 21.13 | 24.75 |
Bra026884.1-P | Field mustard | cytosol | 19.42 | 24.62 |
KRH39112 | Soybean | cytosol | 20.62 | 24.14 |
VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 19.42 | 23.69 |
PGSC0003DMT400025067 | Potato | cytosol | 19.07 | 23.32 |
KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 20.1 | 23.17 |
KRH39066 | Soybean | cytosol | 21.82 | 22.88 |
KRH09084 | Soybean | plastid | 19.93 | 22.7 |
Bra006187.1-P | Field mustard | plastid | 11.34 | 22.68 |
KRH08636 | Soybean | cytosol | 20.27 | 22.61 |
PGSC0003DMT400008757 | Potato | cytosol | 19.24 | 22.49 |
PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 19.07 | 22.42 |
Bra027029.1-P | Field mustard | mitochondrion | 9.28 | 22.22 |
KRH25652 | Soybean | cytosol, golgi | 20.62 | 22.22 |
KRH48615 | Soybean | mitochondrion | 20.79 | 22.2 |
KRH08607 | Soybean | cytosol | 21.31 | 22.1 |
VIT_14s0081g00120.t01 | Wine grape | plastid | 21.99 | 21.96 |
KRH08671 | Soybean | cytosol, mitochondrion | 20.79 | 21.88 |
KRH17148 | Soybean | mitochondrion | 20.27 | 21.65 |
KRH09154 | Soybean | mitochondrion | 20.62 | 21.58 |
KRH08628 | Soybean | plastid | 20.45 | 21.56 |
PGSC0003DMT400025074 | Potato | cytosol | 20.45 | 21.56 |
KRH40400 | Soybean | plastid | 21.31 | 21.49 |
KRH08639 | Soybean | mitochondrion, plastid | 20.62 | 21.24 |
Solyc06g007740.1.1 | Tomato | cytosol | 21.48 | 21.19 |
KRH41817 | Soybean | mitochondrion | 20.1 | 21.08 |
PGSC0003DMT400056665 | Potato | mitochondrion | 21.31 | 21.05 |
KRH08277 | Soybean | plastid | 20.45 | 20.99 |
Bra036649.1-P | Field mustard | cytosol | 14.09 | 20.97 |
AT1G63330.2 | Thale cress | cytosol | 20.1 | 20.93 |
CDX68679 | Canola | cytosol | 4.12 | 20.87 |
KRH09121 | Soybean | mitochondrion | 19.07 | 20.79 |
VIT_14s0081g00270.t01 | Wine grape | plastid | 20.62 | 20.69 |
KRH08625 | Soybean | plastid | 20.45 | 20.66 |
AT5G16640.1 | Thale cress | mitochondrion | 17.87 | 20.63 |
PGSC0003DMT400052971 | Potato | mitochondrion | 20.96 | 20.57 |
KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 18.56 | 20.57 |
VIT_14s0030g02260.t01 | Wine grape | cytosol | 15.64 | 20.54 |
Bra031731.1-P | Field mustard | mitochondrion | 17.87 | 20.47 |
PGSC0003DMT400053185 | Potato | mitochondrion | 20.62 | 20.34 |
Solyc06g007300.1.1 | Tomato | extracellular | 20.62 | 20.27 |
KRH40513 | Soybean | plastid | 12.2 | 20.23 |
PGSC0003DMT400056663 | Potato | plastid | 20.27 | 20.07 |
VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 21.99 | 20.03 |
PGSC0003DMT400008760 | Potato | mitochondrion | 20.1 | 19.97 |
Bra026882.1-P | Field mustard | cytosol | 18.04 | 19.66 |
AT1G62670.1 | Thale cress | mitochondrion | 21.13 | 19.52 |
AT1G63070.1 | Thale cress | mitochondrion | 19.59 | 19.32 |
VIT_14s0030g02280.t01 | Wine grape | plastid | 18.56 | 19.25 |
KRH09097 | Soybean | plastid | 19.24 | 19.21 |
Bra027658.1-P | Field mustard | cytosol, mitochondrion | 17.87 | 19.15 |
KRH08599 | Soybean | cytosol, plastid | 21.99 | 19.13 |
KRH31646 | Soybean | cytosol | 17.01 | 19.11 |
AT3G22470.1 | Thale cress | cytosol, mitochondrion | 20.27 | 19.06 |
AT1G63080.3 | Thale cress | mitochondrion | 20.1 | 19.06 |
PGSC0003DMT400053182 | Potato | cytosol | 19.59 | 19.03 |
Solyc04g080120.1.1 | Tomato | extracellular | 19.93 | 18.95 |
KRH39050 | Soybean | mitochondrion | 17.18 | 18.8 |
AT1G62930.1 | Thale cress | plastid | 20.27 | 18.76 |
AT1G63130.1 | Thale cress | mitochondrion | 20.27 | 18.73 |
AT1G12620.1 | Thale cress | cytosol, mitochondrion | 19.93 | 18.68 |
Bra026971.1-P | Field mustard | mitochondrion | 20.1 | 18.6 |
AT1G12300.1 | Thale cress | mitochondrion | 20.27 | 18.52 |
AT1G12775.1 | Thale cress | cytosol, mitochondrion | 20.45 | 18.48 |
AT1G62590.1 | Thale cress | mitochondrion | 20.1 | 18.45 |
PGSC0003DMT400015293 | Potato | mitochondrion | 19.24 | 18.36 |
PGSC0003DMT400015298 | Potato | mitochondrion | 19.24 | 18.36 |
AT1G62910.1 | Thale cress | mitochondrion | 19.93 | 18.35 |
Bra026954.1-P | Field mustard | mitochondrion | 20.45 | 18.31 |
KRH09095 | Soybean | plastid | 18.38 | 18.29 |
Bra026958.1-P | Field mustard | mitochondrion | 19.93 | 18.21 |
Bra026957.1-P | Field mustard | mitochondrion | 18.56 | 17.91 |
Bra028267.1-P | Field mustard | mitochondrion | 19.24 | 17.89 |
AT1G63400.1 | Thale cress | cytosol, plastid | 17.7 | 17.85 |
Bra025516.1-P | Field mustard | cytosol, mitochondrion | 14.6 | 17.82 |
AT1G12700.2 | Thale cress | cytosol | 18.9 | 17.8 |
TraesCS6A01G014500.1 | Wheat | cytosol, mitochondrion | 7.73 | 17.79 |
Bra016762.1-P | Field mustard | mitochondrion | 18.38 | 17.63 |
AT1G62680.2 | Thale cress | plastid | 16.49 | 17.52 |
Bra036651.1-P | Field mustard | mitochondrion | 15.98 | 17.38 |
AT1G64583.1 | Thale cress | mitochondrion | 15.29 | 17.38 |
AT3G16710.1 | Thale cress | mitochondrion | 15.12 | 17.36 |
Bra026836.1-P | Field mustard | cytosol, mitochondrion | 14.6 | 17.31 |
AT1G63150.1 | Thale cress | mitochondrion | 18.56 | 17.17 |
AT1G06580.1 | Thale cress | mitochondrion | 14.6 | 17.0 |
AT1G62720.1 | Thale cress | mitochondrion | 14.09 | 16.91 |
PGSC0003DMT400053556 | Potato | mitochondrion | 13.23 | 16.78 |
Bra021192.1-P | Field mustard | plastid | 14.43 | 16.67 |
AT1G64580.1 | Thale cress | mitochondrion | 14.95 | 16.63 |
AT1G64100.2 | Thale cress | cytosol | 22.68 | 16.38 |
AT5G41170.1 | Thale cress | mitochondrion | 14.78 | 16.32 |
KRH12873 | Soybean | cytosol | 19.24 | 16.09 |
Bra027026.1-P | Field mustard | mitochondrion | 14.43 | 16.06 |
KRH09085 | Soybean | mitochondrion | 19.42 | 16.05 |
Bra026401.1-P | Field mustard | plastid | 14.09 | 15.33 |
AT4G26800.2 | Thale cress | mitochondrion, plastid | 13.23 | 14.98 |
AT1G62914.1 | Thale cress | mitochondrion | 13.57 | 14.96 |
TraesCS1A01G074000.1 | Wheat | mitochondrion | 7.04 | 14.49 |
TraesCS1A01G066600.1 | Wheat | mitochondrion | 6.36 | 14.07 |
Bra027656.1-P | Field mustard | cytosol | 22.34 | 13.82 |
Bra027726.1-P | Field mustard | mitochondrion | 11.0 | 13.59 |
KRH39064 | Soybean | cytosol | 21.99 | 13.21 |
Bra016758.1-P | Field mustard | plastid | 19.76 | 9.92 |
TraesCS1A01G055500.1 | Wheat | mitochondrion | 1.2 | 3.23 |
Protein Annotations
EnsemblPlants:TraesCS1A01G054800.1 | EnsemblPlantsGene:TraesCS1A01G054800 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR44149 | PANTHER:PTHR44149:SF3 |
PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1A:-:36259368..36261215
Molecular Weight (calculated)
64537.2 Da
IEP (calculated)
7.444
GRAVY (calculated)
0.073
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQMMAKEGG VCFPNVVAYS TVIHGFFKEG ETGKACNLFH EMMQQGLVPD VVTYNSIIDA LCKARAMDKA ELVLRQMVAN GAQPDTVTYN CMINGYATSG
101: RLKESAKMFR EMKSRGLMPD IVTCNSFLSS LCKHGRSKEA AEFFDSMTAK GHKPDIVSCR ILLHGYATEG CFADMIDLFN SVGSNGIAAD CRVFKILINR
201: YAKRGMTDEA MLIFTEMRGQ GVSPNVVTYS IVIAALSRKL SRMGRLTDAM DKFDQMVALG VQPDRSIYQS LIQGFFMHGG LVKAKELVSQ MINKGIPRPD
301: IVFFNSVINS MCKEGRVMDA HDIFDLVIDI VGVEPDVITY NTLVNGYCRN GRIDDGLALF REMPHKRIKP DTVTYDIILN GLFHSGSTVA ARKMFHEMIE
401: SGITVSIPTY GIIIAGFCRN NCAEEAIDLF HKLSAMNVKF DIAIHNTMIN AIFKVGRREE AKDLFAAISP SGLVPTESTY AVMITNLLED GVVEEADNMF
501: SSMEKSGIIP SSRLLNCIIR MLLEKGEIAK AGNYLSKVDG KSILLEASTT LLMLSLFSKK GKYREDMKLL PAKYQFFMDL VD
101: RLKESAKMFR EMKSRGLMPD IVTCNSFLSS LCKHGRSKEA AEFFDSMTAK GHKPDIVSCR ILLHGYATEG CFADMIDLFN SVGSNGIAAD CRVFKILINR
201: YAKRGMTDEA MLIFTEMRGQ GVSPNVVTYS IVIAALSRKL SRMGRLTDAM DKFDQMVALG VQPDRSIYQS LIQGFFMHGG LVKAKELVSQ MINKGIPRPD
301: IVFFNSVINS MCKEGRVMDA HDIFDLVIDI VGVEPDVITY NTLVNGYCRN GRIDDGLALF REMPHKRIKP DTVTYDIILN GLFHSGSTVA ARKMFHEMIE
401: SGITVSIPTY GIIIAGFCRN NCAEEAIDLF HKLSAMNVKF DIAIHNTMIN AIFKVGRREE AKDLFAAISP SGLVPTESTY AVMITNLLED GVVEEADNMF
501: SSMEKSGIIP SSRLLNCIIR MLLEKGEIAK AGNYLSKVDG KSILLEASTT LLMLSLFSKK GKYREDMKLL PAKYQFFMDL VD
001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.