Factsheet for TraesCS6A01G101100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	65.81	68.39
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	48.11	64.02
TraesCS6B01G129100.1	Wheat	cytosol, plastid	34.0	59.38
TraesCS1A01G073800.1	Wheat	mitochondrion	36.58	55.26
TraesCS1A01G067700.1	Wheat	extracellular	36.78	54.9
TraesCS1A01G066600.1	Wheat	mitochondrion	24.65	47.15
TraesCS1A01G074000.1	Wheat	mitochondrion	25.25	44.88
TraesCS1A01G055500.1	Wheat	mitochondrion	19.28	44.7
TraesCS6A01G015000.1	Wheat	mitochondrion	34.19	41.45
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	20.48	40.71
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	39.16	38.55
Solyc06g007280.2.1	Tomato	cytosol	17.89	35.29
KXG28799	Sorghum	plastid	50.89	33.68
TraesCS1A01G031700.1	Wheat	plastid	48.91	33.2
TraesCS2A01G530600.1	Wheat	cytosol	49.3	32.42
TraesCS1A01G054700.2	Wheat	mitochondrion	52.29	32.39
TraesCS1A01G067600.1	Wheat	mitochondrion	51.69	31.98
TraesCS1A01G067400.1	Wheat	mitochondrion	51.89	31.64
TraesCS1A01G054500.1	Wheat	mitochondrion	48.11	31.03
Zm00001d007531_P001	Maize	plastid	50.1	30.96
Zm00001d007555_P001	Maize	plastid	50.1	30.96
Zm00001d007548_P001	Maize	plastid	49.7	30.71
Zm00001d007559_P001	Maize	plastid	49.7	30.6
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	42.74	29.99
TraesCS6A01G311600.1	Wheat	mitochondrion	49.7	29.9
TraesCS1A01G055800.1	Wheat	mitochondrion	45.73	29.83
TraesCS1A01G031600.1	Wheat	cytosol	39.16	29.76
Zm00001d007534_P001	Maize	plastid	45.92	29.73
TraesCS2A01G531000.1	Wheat	golgi	39.96	29.6
TraesCS1A01G057300.1	Wheat	cytosol	41.55	29.11
TraesCS2A01G526200.1	Wheat	golgi	37.97	28.05
TraesCS1A01G073600.1	Wheat	mitochondrion	21.47	27.55
TraesCS1A01G054800.1	Wheat	cytosol	31.81	27.49
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	38.77	27.31
TraesCS1A01G067000.1	Wheat	mitochondrion	38.37	26.96
KRH40513	Soybean	plastid	18.69	26.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.65	26.0
Bra036649.1-P	Field mustard	cytosol	20.08	25.83
AT1G62914.1	Thale cress	mitochondrion	26.84	25.57
KRH39050	Soybean	mitochondrion	27.04	25.56
KRH39054	Soybean	cytosol	25.05	25.35
KRH39057	Soybean	cytosol	24.65	24.95
KRH39112	Soybean	cytosol	24.65	24.95
AT5G16640.1	Thale cress	mitochondrion	24.85	24.8
Bra027029.1-P	Field mustard	mitochondrion	11.93	24.69
KRH39074	Soybean	cytosol	24.06	24.35
KRH39004	Soybean	cytosol	23.86	24.14
TraesCS2A01G531100.1	Wheat	cytosol	27.24	24.08
KRH39072	Soybean	cytosol	23.66	23.99
KRH09084	Soybean	plastid	24.25	23.87
KRH08636	Soybean	cytosol	24.65	23.75
Solyc06g005220.2.1	Tomato	cytosol	19.09	23.65
AT1G63400.1	Thale cress	cytosol, plastid	27.04	23.57
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.66	23.56
KRH17148	Soybean	mitochondrion	25.25	23.3
KRH39066	Soybean	cytosol	25.65	23.24
VIT_14s0030g02280.t01	Wine grape	plastid	25.65	22.99
KRH08628	Soybean	plastid	25.05	22.83
TraesCS6A01G083000.1	Wheat	cytosol	20.68	22.81
AT1G63080.3	Thale cress	mitochondrion	27.83	22.8
PGSC0003DMT400008757	Potato	cytosol	22.47	22.69
VIT_14s0081g00110.t01	Wine grape	cytosol	22.07	22.61
KRH41817	Soybean	mitochondrion	24.85	22.52
KRH08607	Soybean	cytosol	25.05	22.46
AT1G63330.2	Thale cress	cytosol	24.85	22.36
KRH08639	Soybean	mitochondrion, plastid	25.05	22.3
AT1G62670.1	Thale cress	mitochondrion	27.83	22.22
Bra021192.1-P	Field mustard	plastid	22.27	22.22
Bra026884.1-P	Field mustard	cytosol	20.28	22.22
Bra027636.1-P	Field mustard	cytosol	14.31	22.22
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	23.06	22.1
KRH08625	Soybean	plastid	25.25	22.05
KRH48615	Soybean	mitochondrion	23.86	22.02
AT5G41170.1	Thale cress	mitochondrion	23.06	22.01
KRH31646	Soybean	cytosol	22.66	22.01
KRH08671	Soybean	cytosol, mitochondrion	24.06	21.88
AT1G62720.1	Thale cress	mitochondrion	21.07	21.86
PGSC0003DMT400053556	Potato	mitochondrion	19.88	21.79
AT1G63130.1	Thale cress	mitochondrion	27.24	21.75
VIT_14s0081g00270.t01	Wine grape	plastid	25.05	21.72
KRH09121	Soybean	mitochondrion	23.06	21.72
KRH08277	Soybean	plastid	24.45	21.69
Bra026958.1-P	Field mustard	mitochondrion	27.44	21.66
AT1G62930.1	Thale cress	plastid	27.04	21.62
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.27	21.62
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.48	21.59
Bra028267.1-P	Field mustard	mitochondrion	26.64	21.41
Bra026882.1-P	Field mustard	cytosol	22.66	21.35
Bra026971.1-P	Field mustard	mitochondrion	26.64	21.3
AT1G06580.1	Thale cress	mitochondrion	21.07	21.2
Solyc06g007300.1.1	Tomato	extracellular	24.85	21.11
AT3G16710.1	Thale cress	mitochondrion	21.27	21.1
VIT_14s0081g00120.t01	Wine grape	plastid	24.45	21.1
Bra026954.1-P	Field mustard	mitochondrion	27.24	21.08
PGSC0003DMT400056665	Potato	mitochondrion	24.65	21.05
KRH09154	Soybean	mitochondrion	23.26	21.04
PGSC0003DMT400053185	Potato	mitochondrion	24.65	21.02
PGSC0003DMT400025067	Potato	cytosol	19.88	21.01
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.84	21.0
Bra006187.1-P	Field mustard	plastid	12.13	20.96
Bra036651.1-P	Field mustard	mitochondrion	22.27	20.93
KRH09097	Soybean	plastid	24.25	20.93
Solyc06g007740.1.1	Tomato	cytosol	24.45	20.85
Bra027026.1-P	Field mustard	mitochondrion	21.67	20.84
KRH40400	Soybean	plastid	23.86	20.8
PGSC0003DMT400056663	Potato	plastid	24.25	20.75
AT1G62910.1	Thale cress	mitochondrion	26.04	20.73
AT1G63070.1	Thale cress	mitochondrion	24.25	20.68
PGSC0003DMT400025074	Potato	cytosol	22.66	20.65
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.45	20.61
AT1G12300.1	Thale cress	mitochondrion	26.04	20.57
KRH09095	Soybean	plastid	23.86	20.51
AT1G64583.1	Thale cress	mitochondrion	20.87	20.51
KXG35774	Sorghum	cytosol, mitochondrion	19.28	20.51
AT1G12775.1	Thale cress	cytosol, mitochondrion	26.24	20.5
Bra016762.1-P	Field mustard	mitochondrion	24.65	20.43
KRH25652	Soybean	cytosol, golgi	21.87	20.37
AT1G62590.1	Thale cress	mitochondrion	25.65	20.35
PGSC0003DMT400052977	Potato	cytosol	15.71	20.31
AT1G64580.1	Thale cress	mitochondrion	21.07	20.27
AT4G26800.2	Thale cress	mitochondrion, plastid	20.68	20.23
Bra026957.1-P	Field mustard	mitochondrion	24.25	20.23
AT1G12700.2	Thale cress	cytosol	24.45	19.9
AT1G63150.1	Thale cress	mitochondrion	24.65	19.71
Bra026401.1-P	Field mustard	plastid	20.87	19.63
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.85	19.56
PGSC0003DMT400008760	Potato	mitochondrion	22.66	19.45
AT1G62680.2	Thale cress	plastid	20.87	19.16
Bra031731.1-P	Field mustard	mitochondrion	19.28	19.09
PGSC0003DMT400052971	Potato	mitochondrion	22.27	18.89
KRH09082	Soybean	cytosol	15.31	18.87
Solyc04g080120.1.1	Tomato	extracellular	22.86	18.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.28	18.78
PGSC0003DMT400053182	Potato	cytosol	22.07	18.53
PGSC0003DMT400015293	Potato	mitochondrion	22.47	18.52
PGSC0003DMT400015298	Potato	mitochondrion	22.47	18.52
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.5	17.92
KRH08599	Soybean	cytosol, plastid	23.46	17.64
PGSC0003DMT400008759	Potato	cytosol	11.13	17.55
Bra027726.1-P	Field mustard	mitochondrion	16.3	17.41
KRH09085	Soybean	mitochondrion	22.66	16.19
AT1G64100.2	Thale cress	cytosol	25.84	16.13
TraesCS6A01G014600.1	Wheat	cytosol	12.52	15.95
TraesCS1A01G073700.1	Wheat	cytosol	11.73	15.32
Bra027656.1-P	Field mustard	cytosol	26.24	14.03
Solyc06g007810.1.1	Tomato	cytosol	7.36	13.81
KRH39064	Soybean	cytosol	25.84	13.42
KRH12873	Soybean	cytosol	18.49	13.36
VIT_14s0030g02260.t01	Wine grape	cytosol	11.13	12.64
TraesCS1A01G056000.1	Wheat	cytosol	8.75	10.95
Bra016758.1-P	Field mustard	plastid	24.65	10.7
TraesCS1A01G067800.1	Wheat	cytosol	5.37	7.22
TraesCS1A01G055600.1	Wheat	cytosol	1.99	3.08
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G101100.1	EnsemblPlantsGene:TraesCS6A01G101100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:69132561..69134072

Molecular Weight (calculated)

56026.0 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.003

Length

503 amino acids

Sequence
(BLAST)

001: MPRVRPGSSS STVSSRANQL LNKLKDHLGS GTLQPERAHQ LFDKLLRQTV PVSAFALNGL FAALARALPS AACTDGPALA IALFNRMARE GRRVIEPNIY
101: TYNILIDCCC RSRHPDLGPA FFGFLLKTGI KADIITFNSL LKCLCDMMQM EEALNMLLYR MPELPDSISY SIIIKSLCDN GRSQCALDLL RMKAKKGADH
201: YPGLVAYNRV INGLIKEGEL SKACSLFHEM MQQGVVPNVV TYSSIIDALC KAGAMDKAEV ALRQMVGNGV RPDIFTYTSL IHGYSISGQF EEVVRLLEKL
301: RSQGVKPTVF TCNTVMDYLC KHGKIKEAAE FFYSMPEKGH KPNIVSYSIM LYGYAKEGSL VEMTDLCELM ARDGIVPDLH CLNILINAYA KCGMMDVAML
401: FFKDMLKQGV NPDEVTYLAV ITGYCRVGMM DDAMEKFNEM IDMGVPRNST VYRCMIQGYL NHGDFLKAKV LTTEMKTKGI HPRPRKSQRI DSGYLMTQLF
501: TGA

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.