Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G153300.1 | Wheat | nucleus | 91.15 | 88.42 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 84.77 | 84.25 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 80.35 | 78.81 |
| Os03t0596900-01 | Rice | nucleus | 39.71 | 54.91 |
| EER91265 | Sorghum | nucleus | 34.57 | 52.09 |
| Zm00001d013757_P010 | Maize | nucleus | 34.26 | 51.0 |
| Zm00001d033159_P001 | Maize | nucleus | 21.81 | 47.43 |
| GSMUA_Achr9P09240_001 | Banana | nucleus | 12.04 | 38.61 |
| GSMUA_Achr6P35030_001 | Banana | nucleus | 19.96 | 36.67 |
| GSMUA_Achr4P23560_001 | Banana | nucleus | 19.65 | 35.63 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 11.42 | 31.9 |
| Solyc10g006000.2.1 | Tomato | nucleus | 17.18 | 30.14 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 18.21 | 29.55 |
| KRG98507 | Soybean | nucleus | 21.6 | 28.57 |
| KRH46360 | Soybean | nucleus | 20.99 | 27.57 |
| CDX94304 | Canola | nucleus | 12.14 | 27.0 |
| CDY06563 | Canola | nucleus | 18.93 | 26.78 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 13.37 | 26.42 |
| Solyc07g065490.2.1 | Tomato | nucleus | 17.18 | 26.34 |
| CDY28645 | Canola | nucleus | 20.37 | 24.97 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 17.49 | 24.89 |
| KRH46364 | Soybean | nucleus | 20.58 | 24.78 |
| AT4G26630.1 | Thale cress | nucleus | 19.24 | 24.51 |
| Bra027748.1-P | Field mustard | nucleus | 4.42 | 24.43 |
| AT5G55660.1 | Thale cress | nucleus | 19.34 | 24.16 |
| KRG98502 | Soybean | nucleus | 17.8 | 23.7 |
| CDX89318 | Canola | nucleus | 16.98 | 23.44 |
| CDY20754 | Canola | nucleus | 19.03 | 23.3 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 20.58 | 23.12 |
| Bra035582.1-P | Field mustard | nucleus | 18.83 | 23.05 |
| CDY17352 | Canola | extracellular, vacuole | 19.34 | 22.71 |
| Bra026415.1-P | Field mustard | nucleus | 19.03 | 22.16 |
| CDX97358 | Canola | nucleus | 20.16 | 16.16 |
| Bra010432.1-P | Field mustard | nucleus | 17.49 | 15.03 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G148100.1 | EnsemblPlantsGene:TraesCS4B01G148100 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4B:-:212492850..212501746
Molecular Weight (calculated)
106533.0 Da
IEP (calculated)
4.660
GRAVY (calculated)
-1.223
Length
972 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGADLAPVM ELKAVANGGT STDVVASDKK DNTKMEEAGE SKDVAVANTN ANQQNKASEN GAKGSSDDDA KMEEAEDAKE DDVGAVKQAG TEDAKLGDNA
101: DAKEGNGPNA AEHEDSKTAS IEDVVAKEDD NTKSAEHKDY KMVIVEDADA KEDDKAAKAA EHEDSETAGI EDVVAMEDDN TKSAEYKDSK MIIVEDANAN
201: EDDKAKVAEH EDSKASGIEY TVAKEDANTK SAEHKDSKMV IVEDADAKED DKAKAAEHDD HRTGGVAAER KDHRTGGVED ADANEDIGAK DEECKDGNMN
301: TVDNADVKED EDANAAEHED AKMVDVDDAN AKEDYGTKVA EHEDVKMGAV EDIDAKEDNN TKAAEHQDII MGVVEHADVK EDNSSNVAEC VDVKMVEAET
401: KPGDAELEDK GHKEEMDVNT EVKKGPKDAE QCGSEMHDEL NGQGKNGAAR QQENKAEEMS DDDSQGEEEV EEKGPSDKKE EGGDGKANEN EEKLEKECAN
501: KEGKDGKVTE EEVSEADKNV EENKEETPKN KRARSSRDRR QGQDKKQHES KSREAKSLLN TPSPYGIDRP QRERKIVERL VEVIDKEPNR SFVVEKGRGT
601: PLKDIPSVAQ RLTRKKPADL KFLHNVLFGR KGKTVDFKGH ILQFSGFVWH ESDEKQRAKA KEKLDKCMKD MLVDLCWLLA IPVPKTNIRK EDIVAKLLDF
701: IAEPHAMPDS GLSDDQGSNS RKRKRGGGSS SKTSDITPKR SKKKFADDIS PRRKQALEYD TDEDVKSDSE EDADESHDEQ EDGYDSAEEK ASRKSSEVKY
801: SAGRKKAAAG STHRTSPPRT ASKTAGKTSP SKGSKEKESP DESAKVFSRK KKPIISKHTP SSEKVIEENK SSGKEAMKSK GESAEGGLPS KAELKKTIIG
901: ILKKVDFNTS TFSDILKKLD DHYKIDLTAR KGAIKIMIQE ELTKLSEQED DDQDKNADAK KKQSRHRAKV TG
101: DAKEGNGPNA AEHEDSKTAS IEDVVAKEDD NTKSAEHKDY KMVIVEDADA KEDDKAAKAA EHEDSETAGI EDVVAMEDDN TKSAEYKDSK MIIVEDANAN
201: EDDKAKVAEH EDSKASGIEY TVAKEDANTK SAEHKDSKMV IVEDADAKED DKAKAAEHDD HRTGGVAAER KDHRTGGVED ADANEDIGAK DEECKDGNMN
301: TVDNADVKED EDANAAEHED AKMVDVDDAN AKEDYGTKVA EHEDVKMGAV EDIDAKEDNN TKAAEHQDII MGVVEHADVK EDNSSNVAEC VDVKMVEAET
401: KPGDAELEDK GHKEEMDVNT EVKKGPKDAE QCGSEMHDEL NGQGKNGAAR QQENKAEEMS DDDSQGEEEV EEKGPSDKKE EGGDGKANEN EEKLEKECAN
501: KEGKDGKVTE EEVSEADKNV EENKEETPKN KRARSSRDRR QGQDKKQHES KSREAKSLLN TPSPYGIDRP QRERKIVERL VEVIDKEPNR SFVVEKGRGT
601: PLKDIPSVAQ RLTRKKPADL KFLHNVLFGR KGKTVDFKGH ILQFSGFVWH ESDEKQRAKA KEKLDKCMKD MLVDLCWLLA IPVPKTNIRK EDIVAKLLDF
701: IAEPHAMPDS GLSDDQGSNS RKRKRGGGSS SKTSDITPKR SKKKFADDIS PRRKQALEYD TDEDVKSDSE EDADESHDEQ EDGYDSAEEK ASRKSSEVKY
801: SAGRKKAAAG STHRTSPPRT ASKTAGKTSP SKGSKEKESP DESAKVFSRK KKPIISKHTP SSEKVIEENK SSGKEAMKSK GESAEGGLPS KAELKKTIIG
901: ILKKVDFNTS TFSDILKKLD DHYKIDLTAR KGAIKIMIQE ELTKLSEQED DDQDKNADAK KKQSRHRAKV TG
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.