Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G436900.1 | Wheat | nucleus | 83.94 | 88.44 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 83.74 | 83.74 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 71.75 | 62.04 |
| Os01t0924900-01 | Rice | nucleus | 55.49 | 53.63 |
| EES01993 | Sorghum | nucleus | 48.98 | 47.53 |
| Zm00001d042302_P002 | Maize | nucleus | 47.97 | 40.9 |
| CDX77921 | Canola | nucleus | 32.32 | 37.32 |
| CDY37915 | Canola | nucleus | 31.91 | 37.12 |
| Bra019559.1-P | Field mustard | nucleus | 31.5 | 37.08 |
| Bra029213.1-P | Field mustard | nucleus | 21.14 | 36.88 |
| KRH63796 | Soybean | nucleus | 39.02 | 35.89 |
| AT3G48710.1 | Thale cress | nucleus | 33.54 | 35.71 |
| GSMUA_Achr11P... | Banana | nucleus | 39.43 | 35.6 |
| KRH41110 | Soybean | nucleus | 34.96 | 35.32 |
| CDY69625 | Canola | nucleus | 20.73 | 34.93 |
| CDY39861 | Canola | nucleus | 25.41 | 34.63 |
| GSMUA_Achr10P... | Banana | nucleus | 39.02 | 34.53 |
| PGSC0003DMT400081181 | Potato | nucleus | 38.21 | 34.5 |
| Solyc03g097490.2.1 | Tomato | nucleus | 37.2 | 34.01 |
| CDY62886 | Canola | nucleus | 33.54 | 33.95 |
| AT5G63550.2 | Thale cress | nucleus | 36.38 | 33.71 |
| KRH54152 | Soybean | nucleus | 37.4 | 33.52 |
| KRH59791 | Soybean | nucleus | 35.57 | 33.27 |
| CDY05865 | Canola | plastid | 21.54 | 33.12 |
| Bra038644.1-P | Field mustard | nucleus | 32.93 | 33.06 |
| Solyc06g072660.2.1 | Tomato | nucleus | 35.16 | 32.95 |
| CDY41517 | Canola | nucleus | 32.52 | 32.65 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 37.2 | 32.11 |
| CDX81185 | Canola | nucleus | 35.16 | 30.89 |
| Bra035837.1-P | Field mustard | nucleus | 34.15 | 30.6 |
| PGSC0003DMT400069255 | Potato | nucleus | 30.49 | 30.3 |
| CDY16716 | Canola | nucleus | 33.74 | 29.86 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 26.42 | 13.37 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G471100.1 | EnsemblPlantsGene:TraesCS3B01G471100 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3B:+:719773332..719778924
Molecular Weight (calculated)
54584.6 Da
IEP (calculated)
9.091
GRAVY (calculated)
-1.325
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAKPADP APAAKPADPA PADPPADDPM DADAEAEEHE EEAESEEEAE AQPQKKRGRR KRVPREPATP ATGRPSRERK TVERYAELTP RSTPAKKSAA
101: ILQGSGTKLK EIPNVFFKLS KRKVDDNLQS LHALLFGRKS TVHFLKRNLS QFSGFVWTDN PEKQRNRIKE RLDKMHKEKL LDFCDILDVQ TKHTLKKEEV
201: SAKLLEFLES PCITRDVVIS DVKKGKKRRR KSKGTSGEKK KRKSRKQAVE AEKENDDEDD AGPAGSEDAS MGESDEDSEV KEETKSDEEP EATPVKKKST
301: DDKQGKKEAG SKAKENDASV KKTPTKSVKS VSKPDVEPES KKAAKKTPKN STKGSNTPVE KAKKKVAKPK KDDGKESKNN SKARKKQGAK ASGGNKGKDK
401: VAPTTKQLHG VVSNILKEVD FNTATLADIL RKLGDHFDMD LMDRKSEVKR IIEEVINSMS DDEGEEENEE DAEENGKKGE DSKEDPDEEE EK
101: ILQGSGTKLK EIPNVFFKLS KRKVDDNLQS LHALLFGRKS TVHFLKRNLS QFSGFVWTDN PEKQRNRIKE RLDKMHKEKL LDFCDILDVQ TKHTLKKEEV
201: SAKLLEFLES PCITRDVVIS DVKKGKKRRR KSKGTSGEKK KRKSRKQAVE AEKENDDEDD AGPAGSEDAS MGESDEDSEV KEETKSDEEP EATPVKKKST
301: DDKQGKKEAG SKAKENDASV KKTPTKSVKS VSKPDVEPES KKAAKKTPKN STKGSNTPVE KAKKKVAKPK KDDGKESKNN SKARKKQGAK ASGGNKGKDK
401: VAPTTKQLHG VVSNILKEVD FNTATLADIL RKLGDHFDMD LMDRKSEVKR IIEEVINSMS DDEGEEENEE DAEENGKKGE DSKEDPDEEE EK
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.