Factsheet for Solyc06g072660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069255	Potato	nucleus	70.48	74.75
Solyc03g097490.2.1	Tomato	nucleus	51.05	49.81
KRH41110	Soybean	nucleus	43.05	46.41
AT3G48710.1	Thale cress	nucleus	37.14	42.21
KRH59791	Soybean	nucleus	42.29	42.21
CDX77921	Canola	nucleus	33.71	41.55
Bra029213.1-P	Field mustard	nucleus	22.29	41.49
CDY39861	Canola	nucleus	28.38	41.27
KRH54152	Soybean	nucleus	43.05	41.17
Bra019559.1-P	Field mustard	nucleus	32.76	41.15
CDY37915	Canola	nucleus	33.14	41.13
KRH63796	Soybean	nucleus	41.9	41.12
VIT_17s0000g00960.t01	Wine grape	nucleus	44.38	40.88
CDY62886	Canola	nucleus	37.33	40.33
Bra038644.1-P	Field mustard	nucleus	37.33	40.0
CDY69625	Canola	nucleus	22.1	39.73
CDY41517	Canola	nucleus	36.57	39.18
AT5G63550.2	Thale cress	nucleus	38.29	37.85
CDY05865	Canola	plastid	22.67	37.19
TraesCS3A01G436900.1	Wheat	nucleus	32.38	36.4
CDY16716	Canola	nucleus	37.9	35.79
CDX81185	Canola	nucleus	38.1	35.71
Bra035837.1-P	Field mustard	nucleus	37.33	35.7
TraesCS3B01G471100.1	Wheat	nucleus	32.95	35.16
Os01t0924900-01	Rice	nucleus	33.9	34.97
TraesCS3D01G429200.1	Wheat	nucleus	32.57	34.76
EES01993	Sorghum	nucleus	33.33	34.52
GSMUA_Achr10P...	Banana	nucleus	34.67	32.73
GSMUA_Achr11P...	Banana	nucleus	33.33	32.11
HORVU3Hr1G095450.1	Barley	plasma membrane	33.33	30.76
Solyc10g006000.2.1	Tomato	nucleus	31.05	29.42
Zm00001d042302_P002	Maize	nucleus	30.86	28.08
Solyc07g065490.2.1	Tomato	nucleus	33.71	27.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:2000779	UniProt:K4C8Y6	PFAM:PF08766
PANTHER:PTHR13468	SUPFAM:SSF109715	EnsemblPlantsGene:Solyc06g072660.2	EnsemblPlants:Solyc06g072660.2.1	UniParc:UPI00027659AC	SEG:seg

Description

No Description!

Coordinates

chr6:-:44806863..44812218

Molecular Weight (calculated)

58484.5 Da

IEP (calculated)

5.436

GRAVY (calculated)

-1.359

Length

525 amino acids

Sequence
(BLAST)

001: MAADKETLEE KKQEKETIEK EAKAKRSSEE ENEGAEEMDV DKEDEKAKEK VVKKVEDEGV EKEEEAKSDD AISPKTPGSR PTRERKTVER YFESLVYRGS
101: ATKPLSIEKG QGTQLKDIPN VAYMLSKRKL DDNLHTLHSI LFGKKSKAHN LKKNIGLFSG YVWVENEQEK QRAKIKEKLD KCVKEKLLVF CDILNIPVSK
201: SATKKDELSV KLLDFLESPH STTDSLLAEK ELRRKKRKSK GKTSKSTGSL DKAAGKSEKK HQKPKIEEDE SDDEPSSNES GDDNDGEEAD EVGSDHEESG
301: SEKEEEKNEE QEEEKPKKKK SNGNVSSKKD SGNKVTEKPK AVKKDNSAKS PKSMTKSTKV SSSTASKRGA SGADSLVTPK KQKVEKNSQK EENESVKENA
401: SNKKKSTKTP AKVSEKDGKE KSGKKAKAEP KKEEIHAAVV NILKEVDFNS ATLSDIIRNL GSHFGVDLMH RKIEVKAIIT DVINNMSDDE EGDDSEAEND
501: EEKNEGDDPK AENDEEKNEG DDSDA

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.