Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019559.1-P | Field mustard | nucleus | 88.65 | 89.71 |
| CDX77921 | Canola | nucleus | 87.71 | 87.09 |
| CDY05865 | Canola | plastid | 49.17 | 65.0 |
| AT3G48710.1 | Thale cress | nucleus | 67.61 | 61.9 |
| CDY39861 | Canola | nucleus | 40.9 | 47.92 |
| CDY62886 | Canola | nucleus | 51.3 | 44.65 |
| CDY69625 | Canola | nucleus | 30.02 | 43.49 |
| CDY41517 | Canola | nucleus | 49.65 | 42.86 |
| CDX81185 | Canola | nucleus | 53.43 | 40.36 |
| CDY16716 | Canola | nucleus | 52.48 | 39.93 |
| KRH41110 | Soybean | nucleus | 43.97 | 38.19 |
| KRH63796 | Soybean | nucleus | 46.81 | 37.01 |
| KRH59791 | Soybean | nucleus | 45.39 | 36.5 |
| KRH54152 | Soybean | nucleus | 45.39 | 34.97 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 45.15 | 33.51 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 36.88 | 33.4 |
| Solyc06g072660.2.1 | Tomato | nucleus | 41.13 | 33.14 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 38.3 | 32.93 |
| PGSC0003DMT400081181 | Potato | nucleus | 41.84 | 32.48 |
| Solyc03g097490.2.1 | Tomato | nucleus | 41.13 | 32.34 |
| EES01993 | Sorghum | nucleus | 38.53 | 32.15 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 37.12 | 31.91 |
| PGSC0003DMT400069255 | Potato | nucleus | 35.22 | 30.1 |
| GSMUA_Achr11P... | Banana | nucleus | 38.53 | 29.91 |
| Os01t0924900-01 | Rice | nucleus | 35.93 | 29.86 |
| GSMUA_Achr10P... | Banana | nucleus | 38.06 | 28.96 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 36.17 | 26.89 |
| Zm00001d042302_P002 | Maize | nucleus | 35.46 | 26.0 |
| CDX94304 | Canola | nucleus | 24.59 | 23.8 |
| CDY06563 | Canola | nucleus | 32.39 | 19.94 |
| CDX89318 | Canola | nucleus | 30.5 | 18.32 |
| CDY20754 | Canola | nucleus | 31.21 | 16.62 |
| CDY28645 | Canola | nucleus | 30.5 | 16.27 |
| CDY17352 | Canola | extracellular, vacuole | 31.44 | 16.06 |
| CDX97358 | Canola | nucleus | 31.21 | 10.88 |
Protein Annotations
| EnsemblPlants:CDY37915 | EnsemblPlantsGene:GSBRNA2T00064914001 | Gene3D:1.10.10.60 | GO:A0A078HHQ4 | InterPro:DEK_C | PANTHER:PTHR13468 |
| PFAM:PF08766 | ProteinID:CDY37915 | ProteinID:CDY37915.1 | SEG:seg | SUPFAM:SSF109715 | UniParc:UPI0004EDB19F |
| UniProt:A0A078HHQ4 | MapMan:35.2 | : | : | : | : |
Description
BnaA06g19020DBnaA06g19020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHQ4]
Coordinates
chrLK032411:-:188404..191585
Molecular Weight (calculated)
47451.2 Da
IEP (calculated)
10.220
GRAVY (calculated)
-1.174
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETKAVES PVKKDGLVAN SAKETEKKEA PVSDDGDSEE EKSGKENETP VTERPKRIIK KVEPHILHTP SSRSSRSKPV SVLQGRGTQL KEIPNVAYKL
101: SKRKPDDNLF LLHTILYGKK GKVQTLKRNI GLFSGFVWSE QEEEKQRART KDKIEKCIKD KLIDFCDVLD IPINKSNVKK EELVVSVLEF LLCPKATRDV
201: VLSDPEKETK KRKKSTAKNV TSGESSDVPA KRRRQTKESG KKQDQPSKSE DTETEDEKDK AEEKKPTNKK NSSKRTKKEK PAAEEEISLK GSARSGRKSS
301: LKVVKSTSSS SKKQKVDKDD SSKEKGKKQT SKPQAKGSKD QGKASKKGNK REPTRKEMHV VVAKILKEVD FNTATLSDIL RKLGIHFGVD LMHRKTEVKD
401: IITDAIDEMS ADDEREENTE DEG
101: SKRKPDDNLF LLHTILYGKK GKVQTLKRNI GLFSGFVWSE QEEEKQRART KDKIEKCIKD KLIDFCDVLD IPINKSNVKK EELVVSVLEF LLCPKATRDV
201: VLSDPEKETK KRKKSTAKNV TSGESSDVPA KRRRQTKESG KKQDQPSKSE DTETEDEKDK AEEKKPTNKK NSSKRTKKEK PAAEEEISLK GSARSGRKSS
301: LKVVKSTSSS SKKQKVDKDD SSKEKGKKQT SKPQAKGSKD QGKASKKGNK REPTRKEMHV VVAKILKEVD FNTATLSDIL RKLGIHFGVD LMHRKTEVKD
401: IITDAIDEMS ADDEREENTE DEG
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.