CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59791	Soybean	nucleus	71.25	65.97
KRH54152	Soybean	nucleus	55.03	48.82
KRH63796	Soybean	nucleus	53.59	48.78
Bra029213.1-P	Field mustard	nucleus	25.67	44.33
AT3G48710.1	Thale cress	nucleus	41.89	44.16
CDY37915	Canola	nucleus	38.19	43.97
CDY69625	Canola	nucleus	26.08	43.49
CDX77921	Canola	nucleus	37.78	43.19
Solyc06g072660.2.1	Tomato	nucleus	46.41	43.05
Bra019559.1-P	Field mustard	nucleus	36.76	42.82
Solyc03g097490.2.1	Tomato	nucleus	46.82	42.38
VIT_17s0000g00960.t01	Wine grape	nucleus	49.28	42.11
PGSC0003DMT400069255	Potato	nucleus	41.48	40.81
PGSC0003DMT400081181	Potato	nucleus	45.59	40.73
CDY39861	Canola	nucleus	30.18	40.72
CDY62886	Canola	nucleus	40.25	40.33
Bra038644.1-P	Field mustard	nucleus	39.84	39.59
CDY41517	Canola	nucleus	39.01	38.78
CDY05865	Canola	plastid	25.46	38.75
AT5G63550.2	Thale cress	nucleus	41.07	37.66
EES01993	Sorghum	nucleus	37.58	36.09
TraesCS3A01G436900.1	Wheat	nucleus	34.5	35.97
Os01t0924900-01	Rice	nucleus	36.55	34.97
TraesCS3B01G471100.1	Wheat	nucleus	35.32	34.96
GSMUA_Achr11P...	Banana	nucleus	39.01	34.86
Bra035837.1-P	Field mustard	nucleus	39.22	34.79
CDX81185	Canola	nucleus	39.63	34.46
CDY16716	Canola	nucleus	39.22	34.35
TraesCS3D01G429200.1	Wheat	nucleus	34.7	34.35
GSMUA_Achr10P...	Banana	nucleus	39.01	34.17
HORVU3Hr1G095450.1	Barley	plasma membrane	36.96	31.63
Zm00001d042302_P002	Maize	nucleus	35.52	29.98
KRG98507	Soybean	nucleus	35.52	23.54
KRH46360	Soybean	nucleus	33.88	22.3
KRG98502	Soybean	nucleus	32.03	21.37
KRH46364	Soybean	nucleus	35.32	21.31

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100779284	MapMan:35.2	EMBL:ACUP02004750	ncoils:Coil	InterPro:DEK_C
EnsemblPlantsGene:GLYMA_08G010600	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006338
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393
GO:GO:2000779	UniProt:I1KP58	EnsemblPlants:KRH41110	ProteinID:KRH41110	ProteinID:KRH41110.1	PFAM:PF08766
PANTHER:PTHR13468	SUPFAM:SSF109715	UniParc:UPI00023389E9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:852781..858747

Molecular Weight (calculated)

54922.7 Da

IEP (calculated)

6.559

GRAVY (calculated)

-1.326

Length

487 amino acids

Sequence
(BLAST)

001: MPSETLENQK PQVEDQQDLA EDSHTEQEDN SEMKEIDGKG EEEKEKEEEV EGDEENEEKE ERDELKSKKS TKESAFATPG SERPTRERKT VERYTVSSPD
101: KFPRSSSIKA LSIEKGSGTQ LMDIPNVAFT LSKRKADDNL RALHSILFGK KAKAHHLKRN IGLFSGYVWT ENEEKQRAKI REKIDKCVKE KLVDFCNVLN
201: IPITKTSMKK EELSAKLLEF LESPHATTDV LLADKEKKGK KRARKQTPSK SPAKKQKQNS QVGKKQKQSS DIEDSDAAEP SDAKVDSRED DDSSQKSEGG
301: NKESISEKEE DKEKVHKRSS KKILKEDQTT PVKKTTGVKT AKSNENTSKK STSKRAVTDS TSKSKKQKSV KENLNSKRKD ANKKQTDKSL KALLKDQGKD
401: KSSEKAKAEP SKEELHRVAV DILKEVDFNK ATLSDILRQL GTHFDVDLMP RKAEVKDIIT DVINNMSDDD REEAENVGDD DADEDDA

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.