Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77921 | Canola | nucleus | 64.07 | 69.48 |
| Bra019559.1-P | Field mustard | nucleus | 62.77 | 69.38 |
| CDY37915 | Canola | nucleus | 61.9 | 67.61 |
| CDY05865 | Canola | plastid | 44.16 | 63.75 |
| AT5G63550.2 | Thale cress | nucleus | 54.55 | 47.46 |
| KRH41110 | Soybean | nucleus | 44.16 | 41.89 |
| KRH63796 | Soybean | nucleus | 45.02 | 38.88 |
| KRH59791 | Soybean | nucleus | 43.94 | 38.59 |
| Solyc03g097490.2.1 | Tomato | nucleus | 44.37 | 38.1 |
| KRH54152 | Soybean | nucleus | 45.24 | 38.07 |
| Solyc06g072660.2.1 | Tomato | nucleus | 42.21 | 37.14 |
| PGSC0003DMT400081181 | Potato | nucleus | 43.51 | 36.88 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 44.59 | 36.14 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 36.36 | 35.97 |
| EES01993 | Sorghum | nucleus | 37.45 | 34.12 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 36.15 | 33.94 |
| GSMUA_Achr11P... | Banana | nucleus | 39.83 | 33.76 |
| PGSC0003DMT400069255 | Potato | nucleus | 36.15 | 33.74 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 35.71 | 33.54 |
| Os01t0924900-01 | Rice | nucleus | 34.63 | 31.43 |
| GSMUA_Achr10P... | Banana | nucleus | 37.23 | 30.94 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 35.71 | 29.0 |
| Zm00001d042302_P002 | Maize | nucleus | 34.63 | 27.73 |
| AT5G55660.1 | Thale cress | nucleus | 33.12 | 19.67 |
| AT4G26630.1 | Thale cress | nucleus | 30.52 | 18.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:824032 | UniProt:A0A178VK90 | ProteinID:AEE78448.1 | EMBL:AK229931 |
| EMBL:AK229982 | EMBL:AK230134 | ArrayExpress:AT3G48710 | EnsemblPlantsGene:AT3G48710 | RefSeq:AT3G48710 | TAIR:AT3G48710 |
| RefSeq:AT3G48710-TAIR-G | EnsemblPlants:AT3G48710.1 | TAIR:AT3G48710.1 | EMBL:BT029155 | ProteinID:CAB62360.1 | ncoils:Coil |
| InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 |
| GO:GO:2000779 | RefSeq:NP_190440.1 | ProteinID:OAP05483.1 | PFAM:PF08766 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13468 | UniProt:Q9SMM8 |
| SUPFAM:SSF109715 | UniParc:UPI000009F221 | SEG:seg | : | : | : |
Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
Coordinates
chr3:+:18040675..18044368
Molecular Weight (calculated)
52070.1 Da
IEP (calculated)
9.388
GRAVY (calculated)
-1.301
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.