Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G471100.1 | Wheat | nucleus | 88.44 | 83.94 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 84.37 | 80.08 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 73.45 | 60.28 |
| Os01t0924900-01 | Rice | nucleus | 60.6 | 55.6 |
| EES01993 | Sorghum | nucleus | 48.82 | 44.97 |
| Zm00001d042302_P002 | Maize | nucleus | 52.03 | 42.11 |
| CDX77921 | Canola | nucleus | 33.83 | 37.09 |
| CDY37915 | Canola | nucleus | 33.4 | 36.88 |
| Bra019559.1-P | Field mustard | nucleus | 32.76 | 36.6 |
| AT3G48710.1 | Thale cress | nucleus | 35.97 | 36.36 |
| Bra029213.1-P | Field mustard | nucleus | 21.63 | 35.82 |
| GSMUA_Achr10P... | Banana | nucleus | 42.18 | 35.43 |
| GSMUA_Achr11P... | Banana | nucleus | 41.11 | 35.23 |
| CDY39861 | Canola | nucleus | 27.19 | 35.18 |
| CDY69625 | Canola | nucleus | 21.63 | 34.59 |
| KRH41110 | Soybean | nucleus | 35.97 | 34.5 |
| KRH63796 | Soybean | nucleus | 39.4 | 34.39 |
| CDY62886 | Canola | nucleus | 35.76 | 34.36 |
| AT5G63550.2 | Thale cress | nucleus | 38.76 | 34.09 |
| CDY05865 | Canola | plastid | 23.34 | 34.06 |
| Bra038644.1-P | Field mustard | nucleus | 34.9 | 33.27 |
| PGSC0003DMT400081181 | Potato | nucleus | 38.76 | 33.21 |
| Solyc03g097490.2.1 | Tomato | nucleus | 38.12 | 33.09 |
| KRH59791 | Soybean | nucleus | 37.26 | 33.08 |
| CDY41517 | Canola | nucleus | 34.48 | 32.86 |
| Solyc06g072660.2.1 | Tomato | nucleus | 36.4 | 32.38 |
| KRH54152 | Soybean | nucleus | 37.9 | 32.24 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 38.76 | 31.75 |
| CDX81185 | Canola | nucleus | 36.4 | 30.36 |
| Bra035837.1-P | Field mustard | nucleus | 35.55 | 30.24 |
| PGSC0003DMT400069255 | Potato | nucleus | 31.69 | 29.9 |
| CDY16716 | Canola | nucleus | 35.55 | 29.86 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 27.84 | 13.29 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G436900.1 | EnsemblPlantsGene:TraesCS3A01G436900 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3A:+:680748719..680754265
Molecular Weight (calculated)
52215.0 Da
IEP (calculated)
9.774
GRAVY (calculated)
-1.361
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADAEAEEH EEEAESEEEA QPLKKRGRRK RLPREPSTPA TGRPSRERKT VERYSELTPR STPAKKSAAI LQGSGTKLKE IPNVFFKLSK RKVDDNLQSL
101: HTLLFGRRSN AHFLKRNLSQ FSGFVWTDNP EKQRNRIKEK LDKMNKEKLI DFCDILDVQA KQLKKEEVSA KLLEFLESPC ITRDVVISDV KKGKKRRRKS
201: KGTSQATAEG ASGEKKKRKS RKQAVEAENE NDDEDDAGPA GDSSMGESDE DSEVKEETKS DEEPEATPVK KKSTDDKQGK KEAGSKAKGK DASAKKTPTK
301: SVKRVSKPDV EPERKKAAKK TPKNSTKESS TPVGKAKKKV AKPKKDVGKE SQNNSKARKK QGAKASGENK GKGKVAPTTK QLHGVVSNIL KEVDFNTATL
401: ADILRKLGDH FDMDLMDRKS EVKRIIEEVI NSMSDDEGEE ENEEEDAEEN GKKEEGSKED PDEEEEK
101: HTLLFGRRSN AHFLKRNLSQ FSGFVWTDNP EKQRNRIKEK LDKMNKEKLI DFCDILDVQA KQLKKEEVSA KLLEFLESPC ITRDVVISDV KKGKKRRRKS
201: KGTSQATAEG ASGEKKKRKS RKQAVEAENE NDDEDDAGPA GDSSMGESDE DSEVKEETKS DEEPEATPVK KKSTDDKQGK KEAGSKAKGK DASAKKTPTK
301: SVKRVSKPDV EPERKKAAKK TPKNSTKESS TPVGKAKKKV AKPKKDVGKE SQNNSKARKK QGAKASGENK GKGKVAPTTK QLHGVVSNIL KEVDFNTATL
401: ADILRKLGDH FDMDLMDRKS EVKRIIEEVI NSMSDDEGEE ENEEEDAEEN GKKEEGSKED PDEEEEK
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.