Factsheet for VIT_17s0000g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41110	Soybean	nucleus	42.11	49.28
KRH63796	Soybean	nucleus	45.44	48.41
Bra029213.1-P	Field mustard	nucleus	22.98	46.45
KRH54152	Soybean	nucleus	44.56	46.27
CDX77921	Canola	nucleus	34.21	45.77
KRH59791	Soybean	nucleus	41.75	45.25
Solyc03g097490.2.1	Tomato	nucleus	42.63	45.17
CDY37915	Canola	nucleus	33.51	45.15
Bra019559.1-P	Field mustard	nucleus	32.81	44.74
AT3G48710.1	Thale cress	nucleus	36.14	44.59
PGSC0003DMT400081181	Potato	nucleus	42.63	44.59
CDY69625	Canola	nucleus	22.81	44.52
Solyc06g072660.2.1	Tomato	nucleus	40.88	44.38
CDY39861	Canola	nucleus	27.89	44.04
CDY05865	Canola	plastid	23.51	41.88
PGSC0003DMT400069255	Potato	nucleus	36.32	41.82
CDY62886	Canola	nucleus	35.26	41.36
AT5G63550.2	Thale cress	nucleus	37.37	40.11
Os01t0924900-01	Rice	nucleus	35.79	40.08
GSMUA_Achr11P...	Banana	nucleus	38.25	40.0
Bra038644.1-P	Field mustard	nucleus	34.04	39.59
CDY41517	Canola	nucleus	33.86	39.39
Bra035837.1-P	Field mustard	nucleus	37.54	38.98
TraesCS3A01G436900.1	Wheat	nucleus	31.75	38.76
TraesCS3D01G429200.1	Wheat	nucleus	33.16	38.41
CDX81185	Canola	nucleus	37.54	38.21
CDY16716	Canola	nucleus	37.02	37.95
TraesCS3B01G471100.1	Wheat	nucleus	32.11	37.2
EES01993	Sorghum	nucleus	32.63	36.69
GSMUA_Achr10P...	Banana	nucleus	34.74	35.61
HORVU3Hr1G095450.1	Barley	plasma membrane	33.33	33.39
Zm00001d042302_P002	Maize	nucleus	32.98	32.58
VIT_19s0015g00430.t01	Wine grape	nucleus	32.98	31.39

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245819	wikigene:100245819	MapMan:35.2	ProteinID:CCB43341	ProteinID:CCB43341.1
ncoils:Coil	InterPro:DEK_C	UniProt:F6GSZ6	EMBL:FN594950	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:2000779	EntrezGene:LOC100245819	wikigene:LOC100245819
PFAM:PF08766	PANTHER:PTHR13468	SUPFAM:SSF109715	TIGR:TC54569	UniParc:UPI0002109CD5	ArrayExpress:VIT_17s0000g00960
EnsemblPlantsGene:VIT_17s0000g00960	EnsemblPlants:VIT_17s0000g00960.t01	unigene:Vvi.3089	RefSeq:XP_002280398	RefSeq:XP_002280398.2	RefSeq:XP_010663772.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:701060..707456

Molecular Weight (calculated)

63328.1 Da

IEP (calculated)

6.121

GRAVY (calculated)

-1.399

Length

570 amino acids

Sequence
(BLAST)

001: MATETLADTK VEDGLGGKEE VREEREQSEA EEKKEKEGED FPEKSVSREN EENEGKEEEG DVKEDESKEE KVESKKGKRS RKQGSKRGQR EGKKSGQESA
101: AKKAKASSRK EPVTPNERPT RERKTVERYS EPLPGRASAS KGLSIEKGTG TQLKDIPNVA FKLSKKKPDE NLQTLHTILF GKKAKIHTLK RNIGQFSGYV
201: WVENEEEKQK AKVKEKLDKC IKEKLVDFCD VLNIPINKAI VRKEELSAKL LEFLESPHAT TDVLLADKEQ KGKIRKRKVT PSKSTSPGET SMEKPAKKRK
301: QTSVGDKQRP SSEVEGEDEV EASASRDDSD EVEDNDTAMK EQSDQEETKS EEEEEEKKEQ KTTKKASSRK SVKEDSGAKH RGKKASASRS VKSPAKLTKK
401: SSSSTSKKAD ADDTSVAPKS KESSAKKRKA EKESQKDQSD PAKEKTASKK RSSRATEKVS SKDLGKGKTS KKAKPEPSRE EMHAVVVDIL KQVDFNTATL
501: SDILRQLGTH FDLDLMHRKT EVKAIITDVI NSMSDDEDEE EEAEENAEAG NDADDKDGEG DGDGDGDDEA

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.