Factsheet for AT5G63550.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41517	Canola	nucleus	61.58	66.73
CDY62886	Canola	nucleus	61.02	66.67
Bra038644.1-P	Field mustard	nucleus	61.02	66.12
Bra035837.1-P	Field mustard	nucleus	67.8	65.57
CDX81185	Canola	nucleus	67.23	63.75
CDY16716	Canola	nucleus	66.48	63.49
AT3G48710.1	Thale cress	nucleus	47.46	54.55
KRH41110	Soybean	nucleus	37.66	41.07
KRH63796	Soybean	nucleus	39.55	39.25
KRH59791	Soybean	nucleus	38.42	38.78
TraesCS3A01G436900.1	Wheat	nucleus	34.09	38.76
KRH54152	Soybean	nucleus	39.92	38.62
PGSC0003DMT400081181	Potato	nucleus	39.36	38.35
Solyc06g072660.2.1	Tomato	nucleus	37.85	38.29
VIT_17s0000g00960.t01	Wine grape	nucleus	40.11	37.37
PGSC0003DMT400069255	Potato	nucleus	34.65	37.17
TraesCS3D01G429200.1	Wheat	nucleus	34.27	36.99
Solyc03g097490.2.1	Tomato	nucleus	37.48	36.99
TraesCS3B01G471100.1	Wheat	nucleus	33.71	36.38
EES01993	Sorghum	nucleus	32.77	34.32
Os01t0924900-01	Rice	nucleus	32.2	33.6
GSMUA_Achr11P...	Banana	nucleus	32.96	32.11
GSMUA_Achr10P...	Banana	nucleus	32.96	31.47
HORVU3Hr1G095450.1	Barley	plasma membrane	32.77	30.58
Zm00001d042302_P002	Maize	nucleus	30.7	28.25
AT5G55660.1	Thale cress	nucleus	29.19	19.92
AT4G26630.1	Thale cress	nucleus	28.06	19.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	EntrezGene:836474	UniProt:A0A178U9G8	ProteinID:AED97768.1	ArrayExpress:AT5G63550
EnsemblPlantsGene:AT5G63550	RefSeq:AT5G63550	TAIR:AT5G63550	RefSeq:AT5G63550-TAIR-G	EnsemblPlants:AT5G63550.2	TAIR:AT5G63550.2
Unigene:At.28992	ProteinID:BAB10448.1	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:2000779	RefSeq:NP_001154794.1	ProteinID:OAO89864.1
PFAM:PF08766	PO:PO:0000005	PO:PO:0000293	PANTHER:PTHR13468	UniProt:Q9FFQ8	SUPFAM:SSF109715
UniParc:UPI00000A7C5C	SEG:seg	:	:	:	:

Description

DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9FFQ8]

Coordinates

chr5:+:25444613..25448172

Molecular Weight (calculated)

59558.7 Da

IEP (calculated)

4.829

GRAVY (calculated)

-1.453

Length

531 amino acids

Sequence
(BLAST)

001: MATETLDEKT PEVNSPAKEE IDVVPKEEKE VEKEKVDSPR IGEAEEEKKE DEEEGEAKEG ELGEKDKEDD VESEEEEEEE EGSGSKKSSE KETVTPTSER
101: PTRERKKVER FSLSTPMRAP PSKSVSIEKG RGTPLREIPN VAHKLSKRKA DDNLMLLHTI LFGKKAKAQM VKRNIGQFSG FAWSEKEEEK QRARIKEKID
201: KCVKEKLIVF CDVLDIPISR SNVKKEELAV KVLEFLESPK ETRDVIIADQ EKQAKKRKST PKRGKSGESS DTPAKRKRQT KKRDLPSDTE EGKDEGDADS
301: EGTNDPHEED DAAPEEESDH EKTDTDDEKD EVEVEKPSKK KSSSKKTVEE SSGSKGKDKQ PSAKGSARSG EKSSKQIAKS TSSPAKKQKV DHVESSKEKS
401: KKQPSKPQAK GSKEKGKATK KGKAKAEPTR KEMLEVVSKI LKEVDFNTAT LSDILQKLSD HFGVELSHRK PEVKDVITEA INAMTDDEEE DEEEEAEAGS
501: DKEKEEVKGE EEEEKAEAES DKEKEKEEPK D

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.