CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54152	Soybean	nucleus	76.07	74.13
KRH59791	Soybean	nucleus	54.58	55.51
KRH41110	Soybean	nucleus	48.78	53.59
Bra019559.1-P	Field mustard	nucleus	36.64	46.89
CDY37915	Canola	nucleus	37.01	46.81
CDX77921	Canola	nucleus	37.01	46.48
Bra029213.1-P	Field mustard	nucleus	24.49	46.45
VIT_17s0000g00960.t01	Wine grape	nucleus	48.41	45.44
AT3G48710.1	Thale cress	nucleus	38.88	45.02
PGSC0003DMT400081181	Potato	nucleus	45.79	44.95
CDY69625	Canola	nucleus	24.3	44.52
Solyc03g097490.2.1	Tomato	nucleus	44.67	44.42
Solyc06g072660.2.1	Tomato	nucleus	41.12	41.9
CDY05865	Canola	plastid	24.67	41.25
CDY39861	Canola	nucleus	27.29	40.44
CDY62886	Canola	nucleus	36.64	40.33
CDY41517	Canola	nucleus	36.26	39.59
AT5G63550.2	Thale cress	nucleus	39.25	39.55
TraesCS3A01G436900.1	Wheat	nucleus	34.39	39.4
Bra038644.1-P	Field mustard	nucleus	36.07	39.39
TraesCS3B01G471100.1	Wheat	nucleus	35.89	39.02
PGSC0003DMT400069255	Potato	nucleus	35.33	38.18
TraesCS3D01G429200.1	Wheat	nucleus	34.95	38.01
GSMUA_Achr11P...	Banana	nucleus	38.5	37.8
Bra035837.1-P	Field mustard	nucleus	38.5	37.52
EES01993	Sorghum	nucleus	35.51	37.48
CDX81185	Canola	nucleus	38.88	37.14
CDY16716	Canola	nucleus	38.32	36.87
Os01t0924900-01	Rice	nucleus	34.21	35.95
GSMUA_Achr10P...	Banana	nucleus	34.77	33.45
HORVU3Hr1G095450.1	Barley	plasma membrane	34.95	32.86
Zm00001d042302_P002	Maize	nucleus	34.77	32.24
KRG98507	Soybean	nucleus	34.02	24.76
KRH46360	Soybean	nucleus	33.08	23.92
KRG98502	Soybean	nucleus	30.28	22.19
KRH46364	Soybean	nucleus	33.46	22.18

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100788998	MapMan:35.2	EMBL:ACUP02002712	ncoils:Coil	InterPro:DEK_C
EnsemblPlantsGene:GLYMA_04G197900	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006338
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393
GO:GO:2000779	UniProt:K7KL81	EnsemblPlants:KRH63796	ProteinID:KRH63796	ProteinID:KRH63796.1	PFAM:PF08766
PANTHER:PTHR13468	SUPFAM:SSF109715	UniParc:UPI00023394F4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:46996724..47003191

Molecular Weight (calculated)

59522.6 Da

IEP (calculated)

6.007

GRAVY (calculated)

-1.360

Length

535 amino acids

Sequence
(BLAST)

001: MATETLEDTK PPLQDDDRAK SEIPEKDASS DDAAAKSRDA NAGDKDGASD NQEVEEKDAA EEKKEEIDED EEEEEDEVEE KEKGKGKKSK KDPVTPAPSE
101: RPTRERKTVE RFSVPSPAKS ARSSASKGLI IEKGRGTQLK DIPNVAFKLS KRKPDDNLHM LHTLLFGKKT KAHNLKRNIG QFSGYVWTEN EDKQRAKVKE
201: RIDKFVKEKL LDFCDVLNIQ INKTNMKKEE LSAKLLEFLE SPHATTDILL ADKEQKGKKR TRKSVPSKSP GEASTETPAK KQKQTSQSGK KQKPSSDDEE
301: DDKAELSDAK DVSQEDEDVA VPNNESDDER SKSEEQKEKS KSHKRTSKKS VKENSVSKAD RTSSAKKTPV KDAKSIEKIK KKTTSKKSVA EHDSASASVK
401: SKQPASKKQK TVSEKQDTKG KTASKKQTDK SSKALVKDQG KSKSNKKAKA EPTKQDMHAV VVDILKEVDF NTATLSDILR QLGTHFGLDL MHRKAEVKDI
501: ITDVINNMSD EEDEEAENDG DADKDDDGDD DDDDA

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.