Factsheet for HORVU3Hr1G095450.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G429200.1	Wheat	nucleus	69.77	80.69
TraesCS3A01G436900.1	Wheat	nucleus	60.28	73.45
TraesCS3B01G471100.1	Wheat	nucleus	62.04	71.75
Os01t0924900-01	Rice	nucleus	48.86	54.62
EES01993	Sorghum	nucleus	43.06	48.32
Zm00001d042302_P002	Maize	nucleus	42.71	42.11
Bra029213.1-P	Field mustard	nucleus	18.45	37.23
KRH41110	Soybean	nucleus	31.63	36.96
CDY37915	Canola	nucleus	26.89	36.17
CDX77921	Canola	nucleus	26.89	35.92
Bra019559.1-P	Field mustard	nucleus	26.36	35.89
AT3G48710.1	Thale cress	nucleus	29.0	35.71
GSMUA_Achr11P...	Banana	nucleus	34.09	35.6
KRH63796	Soybean	nucleus	32.86	34.95
CDY62886	Canola	nucleus	29.7	34.77
CDY69625	Canola	nucleus	17.75	34.59
GSMUA_Achr10P...	Banana	nucleus	33.74	34.53
PGSC0003DMT400081181	Potato	nucleus	33.04	34.5
Solyc03g097490.2.1	Tomato	nucleus	32.34	34.2
CDY39861	Canola	nucleus	21.62	34.07
KRH59791	Soybean	nucleus	31.28	33.84
Solyc06g072660.2.1	Tomato	nucleus	30.76	33.33
VIT_17s0000g00960.t01	Wine grape	nucleus	33.39	33.33
CDY41517	Canola	nucleus	28.65	33.27
Bra038644.1-P	Field mustard	nucleus	28.3	32.86
KRH54152	Soybean	nucleus	31.63	32.79
AT5G63550.2	Thale cress	nucleus	30.58	32.77
CDY05865	Canola	plastid	18.28	32.5
PGSC0003DMT400069255	Potato	nucleus	27.24	31.31
Bra035837.1-P	Field mustard	nucleus	29.88	30.97
CDX81185	Canola	nucleus	29.53	30.0
CDY16716	Canola	nucleus	29.0	29.68
HORVU4Hr1G035250.1	Barley	nucleus	23.2	13.32

Protein Annotations

EnsemblPlants:HORVU3Hr1G095450.1	EnsemblPlantsGene:HORVU3Hr1G095450	Gene3D:1.10.10.60	InterPro:DEK_C	ncoils:Coil	PANTHER:PTHR13468
PFAM:PF08766	SEG:seg	SUPFAM:SSF109715	UniParc:UPI000B46552B	UniProt:A0A287MDR1	MapMan:35.2

Description

No Description!

Coordinates

chrchr3H:-:650221061..650226982

Molecular Weight (calculated)

62485.6 Da

IEP (calculated)

9.894

GRAVY (calculated)

-1.181

Length

569 amino acids

Sequence
(BLAST)

001: VPGACAGRTP KIVPNPPLLP PVGPSPIPHP IPQFNSAGRP SPTTHPSAPL RLPKIPPLFH PRPRPKTLAA LAAAVAGRPQ PMATAAKPAD PAPADPPADD
101: PMDTEEHEEE PASAEEHEEE EQPQKKRAKG KRKRAPATPA TGRPSRERKT VERYSELTPR STPAKKSASI LQGSGTKLKD IPNVFFKLTK RKADDNLQSL
201: HSLLYGRKST AHFLKRNLSQ FSGYVWTDNP EKQRSKIKDK LDKMNKEKLL DFCDILDVQA KSTAKKEEVS AKLLEFLESP CITRAVVISA VKKGKKRRMK
301: SKGTSKATAE GGEKKKRKSQ KQAVEAEKED DDEDGAGPAD SEDLSMGGSD EDAEVKEDAK SDEEPEVTPV KKKSKDDKQG NKEAGSKAKE KDASVKKTPT
401: KSVKSVSKPD VELENKKAVK RTPKNSTKQS KTPVDKAKKK VAKPKKDDGK ESQNNSKARK KPGPKATGEN KGKGKVAPTT KQLHAVVSNI LKEVDFNTAT
501: LADILKKLGD HFDMDLMDRK SEVKRIIEEV INSMSDDEGE EENEEEDAEE NGRKEEDSKE DPDEEKDEK

Best Arabidopsis Sequence Match ( AT3G48710.1 )
(BLAST)

001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD

Arabidopsis Description

At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.