Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035837.1-P | Field mustard | nucleus | 79.29 | 80.87 |
| CDY16716 | Canola | nucleus | 78.39 | 78.96 |
| CDY62886 | Canola | nucleus | 61.43 | 70.78 |
| CDY39861 | Canola | nucleus | 44.64 | 69.25 |
| AT5G63550.2 | Thale cress | nucleus | 63.75 | 67.23 |
| CDY41517 | Canola | nucleus | 58.39 | 66.73 |
| CDY69625 | Canola | nucleus | 30.36 | 58.22 |
| CDY37915 | Canola | nucleus | 40.36 | 53.43 |
| CDX77921 | Canola | nucleus | 40.54 | 53.29 |
| CDY05865 | Canola | plastid | 27.68 | 48.44 |
| KRH41110 | Soybean | nucleus | 34.46 | 39.63 |
| KRH63796 | Soybean | nucleus | 37.14 | 38.88 |
| PGSC0003DMT400081181 | Potato | nucleus | 37.68 | 38.72 |
| Solyc06g072660.2.1 | Tomato | nucleus | 35.71 | 38.1 |
| Solyc03g097490.2.1 | Tomato | nucleus | 36.07 | 37.55 |
| VIT_17s0000g00960.t01 | Wine grape | nucleus | 38.21 | 37.54 |
| KRH54152 | Soybean | nucleus | 36.07 | 36.79 |
| PGSC0003DMT400069255 | Potato | nucleus | 32.32 | 36.57 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 30.36 | 36.4 |
| KRH59791 | Soybean | nucleus | 33.57 | 35.74 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 31.07 | 35.37 |
| TraesCS3B01G471100.1 | Wheat | nucleus | 30.89 | 35.16 |
| EES01993 | Sorghum | nucleus | 30.71 | 33.92 |
| Os01t0924900-01 | Rice | nucleus | 30.18 | 33.2 |
| GSMUA_Achr11P... | Banana | nucleus | 31.61 | 32.48 |
| GSMUA_Achr10P... | Banana | nucleus | 31.25 | 31.47 |
| HORVU3Hr1G095450.1 | Barley | plasma membrane | 30.0 | 29.53 |
| CDX94304 | Canola | nucleus | 21.25 | 27.23 |
| Zm00001d042302_P002 | Maize | nucleus | 26.61 | 25.82 |
| CDY06563 | Canola | nucleus | 27.68 | 22.56 |
| CDY28645 | Canola | nucleus | 28.39 | 20.05 |
| CDX89318 | Canola | nucleus | 25.0 | 19.89 |
| CDY20754 | Canola | nucleus | 27.5 | 19.4 |
| CDY17352 | Canola | extracellular, vacuole | 28.21 | 19.08 |
| CDX97358 | Canola | nucleus | 25.71 | 11.87 |
Protein Annotations
| EnsemblPlants:CDX81185 | EnsemblPlantsGene:GSBRNA2T00134646001 | Gene3D:1.10.10.60 | GO:A0A078CWE4 | InterPro:DEK_C | ncoils:Coil |
| PFAM:PF08766 | ProteinID:CDX81185 | ProteinID:CDX81185.1 | SEG:seg | SUPFAM:SSF109715 | UniParc:UPI0004EF0BAA |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC09g05960D
Coordinates
chrLK031824:+:18790..22036
Molecular Weight (calculated)
62542.4 Da
IEP (calculated)
4.739
GRAVY (calculated)
-1.560
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETLDEKT PGAGSPAKEE LGVGDASKVK EVADPPRNDD AEKKEEAESK EGELEDKDEE EDVKDEEEEG EGSGSKKSPE KREAVTPSSD RPTRERKQVE
101: RFSSSGPVRV TPSKSVSIEK GRGTPLKEIP NVAHNLSKRK ADDNLMLLHT ILYGKKAKAQ MVKKNIGQFS GFAWSEKEEE KQRARLKEKL DKCIKEKLIF
201: FCDVLDIPVN RSNIKKEELA VKVLEFLESP KATRDVILAD REKQAKKRKS TQRKGKSGES SETPAKRKRQ TKKRDQPEAE EGKDEGDSDS EGTKDANEDD
301: DSAREEEESD HEKAGTEDEK DEAEDEKPSD KKISSKKTEE KSSGTKGKDK QASAKGSKKS GEKSSKRVAK STSSPSKKQK VDHEESSKGK SKKQSTKTQA
401: KGSKEKGKAI KKGKAEPTRE EMLEVVSKML QEVDFNTATL SDILKKLSKH FGVDLSHRKP EVKAVITDAI SAMTDEEDEE ENSEAGSDGE NEEEKKAEAE
501: SDKEEEEEKD EEEEKAEAES DKEKEEEEKA EAESDKEKEE EEKAEAESDK EKEEEEKPKD
101: RFSSSGPVRV TPSKSVSIEK GRGTPLKEIP NVAHNLSKRK ADDNLMLLHT ILYGKKAKAQ MVKKNIGQFS GFAWSEKEEE KQRARLKEKL DKCIKEKLIF
201: FCDVLDIPVN RSNIKKEELA VKVLEFLESP KATRDVILAD REKQAKKRKS TQRKGKSGES SETPAKRKRQ TKKRDQPEAE EGKDEGDSDS EGTKDANEDD
301: DSAREEEESD HEKAGTEDEK DEAEDEKPSD KKISSKKTEE KSSGTKGKDK QASAKGSKKS GEKSSKRVAK STSSPSKKQK VDHEESSKGK SKKQSTKTQA
401: KGSKEKGKAI KKGKAEPTRE EMLEVVSKML QEVDFNTATL SDILKKLSKH FGVDLSHRKP EVKAVITDAI SAMTDEEDEE ENSEAGSDGE NEEEKKAEAE
501: SDKEEEEEKD EEEEKAEAES DKEKEEEEKA EAESDKEKEE EEKAEAESDK EKEEEEKPKD
001: MATETLDEKT PEVNSPAKEE IDVVPKEEKE VEKEKVDSPR IGEAEEEKKE DEEEGEAKEG ELGEKDKEDD VESEEEEEEE EGSGSKKSSE KETVTPTSER
101: PTRERKKVER FSLSTPMRAP PSKSVSIEKG RGTPLREIPN VAHKLSKRKA DDNLMLLHTI LFGKKAKAQM VKRNIGQFSG FAWSEKEEEK QRARIKEKID
201: KCVKEKLIVF CDVLDIPISR SNVKKEELAV KVLEFLESPK ETRDVIIADQ EKQAKKRKST PKRGKSGESS DTPAKRKRQT KKRDLPSDTE EGKDEGDADS
301: EGTNDPHEED DAAPEEESDH EKTDTDDEKD EVEVEKPSKK KSSSKKTVEE SSGSKGKDKQ PSAKGSARSG EKSSKQIAKS TSSPAKKQKV DHVESSKEKS
401: KKQPSKPQAK GSKEKGKATK KGKAKAEPTR KEMLEVVSKI LKEVDFNTAT LSDILQKLSD HFGVELSHRK PEVKDVITEA INAMTDDEEE DEEEEAEAGS
501: DKEKEEVKGE EEEEKAEAES DKEKEKEEPK D
101: PTRERKKVER FSLSTPMRAP PSKSVSIEKG RGTPLREIPN VAHKLSKRKA DDNLMLLHTI LFGKKAKAQM VKRNIGQFSG FAWSEKEEEK QRARIKEKID
201: KCVKEKLIVF CDVLDIPISR SNVKKEELAV KVLEFLESPK ETRDVIIADQ EKQAKKRKST PKRGKSGESS DTPAKRKRQT KKRDLPSDTE EGKDEGDADS
301: EGTNDPHEED DAAPEEESDH EKTDTDDEKD EVEVEKPSKK KSSSKKTVEE SSGSKGKDKQ PSAKGSARSG EKSSKQIAKS TSSPAKKQKV DHVESSKEKS
401: KKQPSKPQAK GSKEKGKATK KGKAKAEPTR KEMLEVVSKI LKEVDFNTAT LSDILQKLSD HFGVELSHRK PEVKDVITEA INAMTDDEEE DEEEEAEAGS
501: DKEKEEVKGE EEEEKAEAES DKEKEKEEPK D
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9FFQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.