Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G55660.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT5G55660.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 80.2 | 73.53 |
| CDY17352 | Canola | extracellular, vacuole | 71.75 | 68.72 |
| CDY06563 | Canola | nucleus | 55.74 | 64.34 |
| AT5G55660.1 | Thale cress | nucleus | 59.39 | 60.54 |
| CDY20754 | Canola | nucleus | 57.88 | 57.81 |
| CDX94304 | Canola | nucleus | 30.14 | 54.69 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 34.8 | 46.08 |
| CDX89318 | Canola | nucleus | 40.1 | 45.17 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 17.53 | 39.94 |
| Solyc07g065490.2.1 | Tomato | nucleus | 31.53 | 39.43 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 33.04 | 38.36 |
| Solyc10g006000.2.1 | Tomato | nucleus | 25.73 | 36.82 |
| KRG98507 | Soybean | nucleus | 33.8 | 36.46 |
| KRH46360 | Soybean | nucleus | 33.8 | 36.22 |
| KRG98502 | Soybean | nucleus | 30.9 | 33.56 |
| KRH46364 | Soybean | nucleus | 34.05 | 33.46 |
| CDY69625 | Canola | nucleus | 11.6 | 31.51 |
| CDY37915 | Canola | nucleus | 16.27 | 30.5 |
| CDY62886 | Canola | nucleus | 18.66 | 30.45 |
| EER91265 | Sorghum | nucleus | 24.72 | 30.39 |
| CDY39861 | Canola | nucleus | 13.75 | 30.19 |
| CDX77921 | Canola | nucleus | 16.14 | 30.05 |
| CDY41517 | Canola | nucleus | 17.78 | 28.78 |
| Zm00001d033159_P001 | Maize | nucleus | 16.14 | 28.64 |
| CDX81185 | Canola | nucleus | 20.05 | 28.39 |
| Zm00001d013757_P010 | Maize | nucleus | 23.33 | 28.33 |
| CDY05865 | Canola | plastid | 11.22 | 27.81 |
| CDX97358 | Canola | nucleus | 41.99 | 27.45 |
| Os03t0596900-01 | Rice | nucleus | 23.58 | 26.6 |
| CDY16716 | Canola | nucleus | 18.29 | 26.08 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 10.47 | 25.86 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 24.97 | 20.37 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 24.59 | 19.68 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 24.59 | 19.46 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 23.96 | 19.43 |
| OQU91413 | Sorghum | nucleus | 21.82 | 12.81 |
Protein Annotations
| EnsemblPlants:CDY28645 | EnsemblPlantsGene:GSBRNA2T00040708001 | Gene3D:1.10.10.60 | GO:A0A078GQ28 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | ProteinID:CDY28645 | ProteinID:CDY28645.1 | SEG:seg |
| SUPFAM:SSF109715 | UniParc:UPI0004EE6322 | UniProt:A0A078GQ28 | MapMan:35.2 | : | : |
Description
BnaC09g32300DBnaC09g32300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ28]
Coordinates
chrLK032224:-:351076..355373
Molecular Weight (calculated)
88489.6 Da
IEP (calculated)
4.416
GRAVY (calculated)
-1.640
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEDTKVTA EPTANGTTSS LPKPSGEISG KQAEENASGE GTQENKKGED TGSEKMEIDD DIKQDEEAEV SEKETKAETE KTEEKDVKEP AEIAEANEVK
101: GQPEADQMDE DTDGKKLEAG DGVSGGATAE DTVMKETVES DDKSETDTKG SEVVNKIDTT EGSQDKTEKE SEEEKVNGNE EESKEDKLVG GDEGDSVDEV
201: EKRDTSNKEE APKERNEGEM AEDGKEEKSN KEEEVKEANK EEEDTDVNEP KEEDEKAEAN GEDENDVDDS KDEDEDKEEE TKDEKEDKKE ESMDEKEDEK
301: EKNNDDKEDE NEDSKKSSKR GKGKNEKTRR KTKSEEEKKD AEPKTPYSDR PVRERKSVER LVAVIDKDSS KEFQVEKGKG TPLKDIPNVA YKIARKKSED
401: VFKLLHTILF GGRRGRAAQV KANILRFSGY KWQGDEEKAK DKIKEKLDKC NKEKLLEFCD LFDLSVGKAT TKKEDIVAKL FKFLEKPHAT TDVPVYEKEK
501: GAKRKRTPTK SSHAAGSSSS KRSAKSQKKT DKKSLPHSDD ESEEEKEEEE EEEREHETEE EDEEIDEEEE ENENGIPDQS DDEAPQPSES EEKVESEDSD
601: SESEEETKKK KRGSRTVSGK KESTAGKSRS KKAAVSTKSS PPPKKVAQKR SAGKRKKSDD DDSDTSPKAS SSKRKKTEKP AKEQSSVPSK SASKEKPGKR
701: GGKGKDKTKE PSDEELKNAI VDILKEVDFN TATFTDILNR LAGMFKLDLT SRKSSIKLMI QDELTKLADE AENEVGEEED AEKEKAGGEE VKA
101: GQPEADQMDE DTDGKKLEAG DGVSGGATAE DTVMKETVES DDKSETDTKG SEVVNKIDTT EGSQDKTEKE SEEEKVNGNE EESKEDKLVG GDEGDSVDEV
201: EKRDTSNKEE APKERNEGEM AEDGKEEKSN KEEEVKEANK EEEDTDVNEP KEEDEKAEAN GEDENDVDDS KDEDEDKEEE TKDEKEDKKE ESMDEKEDEK
301: EKNNDDKEDE NEDSKKSSKR GKGKNEKTRR KTKSEEEKKD AEPKTPYSDR PVRERKSVER LVAVIDKDSS KEFQVEKGKG TPLKDIPNVA YKIARKKSED
401: VFKLLHTILF GGRRGRAAQV KANILRFSGY KWQGDEEKAK DKIKEKLDKC NKEKLLEFCD LFDLSVGKAT TKKEDIVAKL FKFLEKPHAT TDVPVYEKEK
501: GAKRKRTPTK SSHAAGSSSS KRSAKSQKKT DKKSLPHSDD ESEEEKEEEE EEEREHETEE EDEEIDEEEE ENENGIPDQS DDEAPQPSES EEKVESEDSD
601: SESEEETKKK KRGSRTVSGK KESTAGKSRS KKAAVSTKSS PPPKKVAQKR SAGKRKKSDD DDSDTSPKAS SSKRKKTEKP AKEQSSVPSK SASKEKPGKR
701: GGKGKDKTKE PSDEELKNAI VDILKEVDFN TATFTDILNR LAGMFKLDLT SRKSSIKLMI QDELTKLADE AENEVGEEED AEKEKAGGEE VKA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.