Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 50.72 | 80.75 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 46.57 | 43.07 |
| Solyc07g065490.2.1 | Tomato | nucleus | 44.95 | 39.27 |
| CDX94304 | Canola | nucleus | 26.35 | 33.41 |
| Solyc03g097490.2.1 | Tomato | nucleus | 31.41 | 32.34 |
| Solyc06g072660.2.1 | Tomato | nucleus | 29.42 | 31.05 |
| KRG98507 | Soybean | nucleus | 41.16 | 31.02 |
| KRH46360 | Soybean | nucleus | 40.07 | 30.0 |
| CDY06563 | Canola | nucleus | 37.18 | 29.99 |
| KRH46364 | Soybean | nucleus | 39.71 | 27.26 |
| KRG98502 | Soybean | nucleus | 35.92 | 27.26 |
| Zm00001d013757_P010 | Maize | nucleus | 32.13 | 27.26 |
| Os03t0596900-01 | Rice | nucleus | 34.12 | 26.88 |
| AT4G26630.1 | Thale cress | nucleus | 37.0 | 26.87 |
| EER91265 | Sorghum | nucleus | 30.87 | 26.51 |
| CDY20754 | Canola | nucleus | 37.91 | 26.45 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 15.16 | 26.17 |
| Bra035582.1-P | Field mustard | nucleus | 37.18 | 25.94 |
| CDY28645 | Canola | nucleus | 36.82 | 25.73 |
| CDX89318 | Canola | nucleus | 32.49 | 25.57 |
| AT5G55660.1 | Thale cress | nucleus | 35.74 | 25.45 |
| Zm00001d033159_P001 | Maize | nucleus | 20.04 | 24.83 |
| Bra026415.1-P | Field mustard | nucleus | 36.1 | 23.95 |
| CDY17352 | Canola | extracellular, vacuole | 35.2 | 23.55 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 36.46 | 23.35 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 30.14 | 17.18 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 30.51 | 16.87 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 29.6 | 16.77 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 29.78 | 16.65 |
| CDX97358 | Canola | nucleus | 35.02 | 15.99 |
| Bra010432.1-P | Field mustard | nucleus | 32.13 | 15.74 |
| OQU91413 | Sorghum | nucleus | 25.45 | 10.44 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 | GO:GO:2000779 | UniProt:K4CXD2 | PFAM:PF08766 |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | SUPFAM:SSF109715 | EnsemblPlantsGene:Solyc10g006000.2 | EnsemblPlants:Solyc10g006000.2.1 | UniParc:UPI000276CB7F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:756753..762127
Molecular Weight (calculated)
62828.4 Da
IEP (calculated)
7.622
GRAVY (calculated)
-1.387
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEGDTVAE LAEVSADNNV AAEDKSKAFI EKNAEKDELK ELEEDSKEAD ERDIENMDID KEEVKESKRG KEKEETKFEV MEEETAEIPD NDKETVEDVA
101: NVQKKEKKSP EENAIEKGSK KSDKSKSGAQ KKDRKRKRKV EDKKELEPKT PLAPTIVRPV RQRKSVERLV ASIEGELTKE IFIEKGRGTA LQDIPNVAYK
201: LSKRKTDDTL KMLHNILFGR RGKAVQFKSN ISQFSGFVWH ENEEKQKMKV KEKLEKCVKE KLFELCDVLD IPVDKETSRK RDLESQLMDF LYAPHPTTSE
301: LLAEKEQSTK GKKKKSPSST IGDLEGSTKS HKKKKAREPK DDQEEGPEVM KANDERSDDE MSKRTKTEEK DGKSEEGSKK DKKKHKRSSN KSSSKKEAGE
401: VKTKKTPSNS SKSSKKNDNN DANSEVHSKK KTTEVVKGNS STPKKPSSKD KTGKKDPNGK GHKKANKLKP SDDELRSAIC EVLKEVDFNT ATFTDIVQML
501: AKRYDTDLTL RKTSVKNMIQ DELTRLVDEA DEEDKDEQEN TEDEKQPSVQ GVEA
101: NVQKKEKKSP EENAIEKGSK KSDKSKSGAQ KKDRKRKRKV EDKKELEPKT PLAPTIVRPV RQRKSVERLV ASIEGELTKE IFIEKGRGTA LQDIPNVAYK
201: LSKRKTDDTL KMLHNILFGR RGKAVQFKSN ISQFSGFVWH ENEEKQKMKV KEKLEKCVKE KLFELCDVLD IPVDKETSRK RDLESQLMDF LYAPHPTTSE
301: LLAEKEQSTK GKKKKSPSST IGDLEGSTKS HKKKKAREPK DDQEEGPEVM KANDERSDDE MSKRTKTEEK DGKSEEGSKK DKKKHKRSSN KSSSKKEAGE
401: VKTKKTPSNS SKSSKKNDNN DANSEVHSKK KTTEVVKGNS STPKKPSSKD KTGKKDPNGK GHKKANKLKP SDDELRSAIC EVLKEVDFNT ATFTDIVQML
501: AKRYDTDLTL RKTSVKNMIQ DELTRLVDEA DEEDKDEQEN TEDEKQPSVQ GVEA
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.