Factsheet for Solyc09g065270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22892874
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049841	Potato	cytosol, extracellular	98.88	98.88
VIT_07s0151g01110.t01	Wine grape	plastid	70.04	68.25
KRH71423	Soybean	plastid	64.79	66.28
GSMUA_Achr7P07510_001	Banana	plastid	65.17	61.92
CDY56458	Canola	plastid	60.3	60.98
CDX93926	Canola	plastid	61.42	60.74
Zm00001d049694_P004	Maize	plastid	59.93	60.61
Os07t0570700-01	Rice	plasma membrane, plastid	60.3	60.53
KRH32022	Soybean	mitochondrion	65.54	59.93
CDX76687	Canola	plastid	59.18	59.85
AT3G63190.1	Thale cress	plastid	61.42	59.64
KXG24244	Sorghum	plastid	59.18	59.62
Bra007733.1-P	Field mustard	plastid	58.8	59.47
TraesCS2A01G197900.1	Wheat	plastid	58.8	59.02
TraesCS2B01G225300.1	Wheat	plastid	58.8	59.02
TraesCS2D01G205900.2	Wheat	plastid	58.8	59.02
Zm00001d035051_P001	Maize	plastid	59.93	53.51
HORVU2Hr1G038570.2	Barley	plastid	58.43	53.42
CDX89180	Canola	plastid	60.3	52.79
Bra040427.1-P	Field mustard	plastid	60.3	52.79
Solyc11g007740.1.1	Tomato	mitochondrion	26.22	25.27

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ncoils:Coil	GO:GO:0000003	GO:GO:0002184
GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009817	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742
GO:GO:0043023	UniProt:K4CUF4	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	EnsemblPlantsGene:Solyc09g065270.2	EnsemblPlants:Solyc09g065270.2.1
TIGRFAMs:TIGR00496	UniParc:UPI000276C51D	SEG:seg	:	:	:

Description

Ribosome-recycling factor, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G63190) UniProtKB/Swiss-Prot;Acc:Q9M1X0]

Coordinates

chr9:+:63339532..63346197

Molecular Weight (calculated)

29997.3 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.446

Length

267 amino acids

Sequence
(BLAST)

001: MTIALSPATP VRLLCQQQLT RKPVLFCFQD KFPTSGNVVC WSASANYSSL WVGARRLQPL VKPSWGKRSG IVRCATIEEI EAEKSSIEKD VKERMEKTVE
101: TVRSNFNSIR TGRASPAMLD KIEVDYYGTP VSLKSIAQIS TPDATSILVQ PYDKSSLKAI EKAIVSSDVG MTPNNDGEVI RLAVPQLTSD RRKELSKIVS
201: KQAEEGKVAI RNIRRDALKA YEKLEKEKKL SEDNVKDLSS DLQKVTDEYM KKIDIVFKQK EKELLKV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.