Factsheet for Os07t0570700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24244	Sorghum	plastid	82.33	82.64
Zm00001d049694_P004	Maize	plastid	80.83	81.44
TraesCS2D01G205900.2	Wheat	plastid	78.2	78.2
TraesCS2A01G197900.1	Wheat	plastid	78.2	78.2
TraesCS2B01G225300.1	Wheat	plastid	77.82	77.82
Zm00001d035051_P001	Maize	plastid	80.08	71.24
HORVU2Hr1G038570.2	Barley	plastid	77.82	70.89
GSMUA_Achr7P07510_001	Banana	plastid	65.04	61.57
Solyc09g065270.2.1	Tomato	plastid	60.53	60.3
PGSC0003DMT400049841	Potato	cytosol, extracellular	60.15	59.93
KRH71423	Soybean	plastid	58.27	59.39
VIT_07s0151g01110.t01	Wine grape	plastid	60.9	59.12
CDX93926	Canola	plastid	59.02	58.15
CDY56458	Canola	plastid	57.14	57.58
AT3G63190.1	Thale cress	plastid	59.4	57.45
Bra007733.1-P	Field mustard	plastid	56.39	56.82
CDX76687	Canola	plastid	55.64	56.06
KRH32022	Soybean	mitochondrion	58.65	53.42
CDX89180	Canola	plastid	59.02	51.48
Bra040427.1-P	Field mustard	plastid	59.02	51.48
Os04t0490400-01	Rice	mitochondrion	27.07	27.69

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EntrezGene:4343662	UniProt:A3BLC3	EMBL:AK065242
ProteinID:BAC84660.1	ProteinID:BAF21961.1	ProteinID:BAT02230.1	ncoils:Coil	ProteinID:EEE67443.1	GO:GO:0000003
GO:GO:0002184	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009817	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544
GO:GO:0042742	GO:GO:0043023	HAMAP:MF_00040	EnsemblPlantsGene:Os07g0570700	EnsemblPlants:Os07t0570700-01	PFAM:PF01765
PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194
TIGRFAMs:TIGR00496	UniParc:UPI00001BF780	RefSeq:XP_015644851.1	SEG:seg	:	:

Description

Ribosome recycling factor family protein. (Os07t0570700-01)

Coordinates

chr7:+:23003380..23008447

Molecular Weight (calculated)

29653.8 Da

IEP (calculated)

9.916

GRAVY (calculated)

-0.508

Length

266 amino acids

Sequence
(BLAST)

001: MPPLHAVSPA AAAAPPRALS SAARVPQRPG CVPERPNILS SSTNFMSLRA GPMRFYSRPL ILQNSDKRAV LRHATIEEIE AEKSVIEDQA RERMEKAIET
101: VQNNFNTVRT GRANPAMLDR IEVEYYGTPV NLKSIAQINT PDATSLLIQP YDKSSLKLIE KTIVAANLGV TPSNDGEVIR VTVPPLTSDR RKELAKTVAK
201: LAEEGKVAIR NIRRDAIKAY DKLEKEKKLS EDNVKDLSAD LQKVTDEYMK KIEAIQKQKE QELMKI

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.