Factsheet for HORVU2Hr1G038570.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G205900.2	Wheat	plastid	88.7	97.37
TraesCS2B01G225300.1	Wheat	plastid	88.7	97.37
TraesCS2A01G197900.1	Wheat	plastid	88.7	97.37
Os07t0570700-01	Rice	plasma membrane, plastid	70.89	77.82
Zm00001d049694_P004	Maize	plastid	69.18	76.52
KXG24244	Sorghum	plastid	69.18	76.23
Zm00001d035051_P001	Maize	plastid	67.47	65.89
GSMUA_Achr7P07510_001	Banana	plastid	57.53	59.79
Solyc09g065270.2.1	Tomato	plastid	53.42	58.43
KRH71423	Soybean	plastid	52.05	58.24
PGSC0003DMT400049841	Potato	cytosol, extracellular	53.08	58.05
VIT_07s0151g01110.t01	Wine grape	plastid	53.08	56.57
CDY56458	Canola	plastid	50.68	56.06
AT3G63190.1	Thale cress	plastid	52.74	56.0
CDX93926	Canola	plastid	51.71	55.93
Bra007733.1-P	Field mustard	plastid	49.66	54.92
CDX76687	Canola	plastid	49.32	54.55
KRH32022	Soybean	mitochondrion	51.03	51.03
CDX89180	Canola	plastid	51.71	49.51
Bra040427.1-P	Field mustard	plastid	51.71	49.51
HORVU2Hr1G084680.4	Barley	plastid	21.23	31.47

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	UniProt:A0A287HRH7	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742	EnsemblPlantsGene:HORVU2Hr1G038570
EnsemblPlants:HORVU2Hr1G038570.2	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI000B464AE5	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:181668527..181673190

Molecular Weight (calculated)

32374.9 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.524

Length

292 amino acids

Sequence
(BLAST)

001: HNFHTNPPLS TRPSSRYHSA CCRAMALHAV SPAAAAPPPR ALSSARLPQR PGCGCLSNRS SLLSSPTNFM KIQSGAVGFF GVPLVLQHSD KRAVLRHATN
101: EEIEEEKTIV EEQAKEKMEK AIETVQSNFN TVRTGRANPS MLDRIEVEYY GTPVNLKTIA QVNTPDATSL LIQPYDKSCL KLIEKAIVAA NIGVTPSNDG
201: EVIRVTVPPL TSDRRKEMTK TVAKLSEEGK VAIRNIRRDA IKAYDKLEKE KKLSEDNVKD LSADLQLQKI TDEYMKKVEA IQKQKEQELS KV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.