Factsheet for Bra007733.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56458	Canola	plastid	91.67	91.67
CDX76687	Canola	plastid	90.91	90.91
AT3G63190.1	Thale cress	plastid	77.27	74.18
Bra040427.1-P	Field mustard	plastid	75.0	64.92
VIT_07s0151g01110.t01	Wine grape	plastid	62.88	60.58
KRH71423	Soybean	plastid	59.85	60.54
Solyc09g065270.2.1	Tomato	plastid	59.47	58.8
PGSC0003DMT400049841	Potato	cytosol, extracellular	59.09	58.43
GSMUA_Achr7P07510_001	Banana	plastid	62.12	58.36
KXG24244	Sorghum	plastid	57.58	57.36
Zm00001d049694_P004	Maize	plastid	56.82	56.82
Os07t0570700-01	Rice	plasma membrane, plastid	56.82	56.39
TraesCS2A01G197900.1	Wheat	plastid	55.3	54.89
TraesCS2B01G225300.1	Wheat	plastid	55.3	54.89
TraesCS2D01G205900.2	Wheat	plastid	55.3	54.89
KRH32022	Soybean	mitochondrion	58.71	53.08
HORVU2Hr1G038570.2	Barley	plastid	54.92	49.66
Zm00001d035051_P001	Maize	plastid	55.3	48.83
Bra000988.1-P	Field mustard	mitochondrion	26.89	26.49

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EnsemblPlantsGene:Bra007733	EnsemblPlants:Bra007733.1	EnsemblPlants:Bra007733.1-P
ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:M4CU39	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI0002542BA4
SEG:seg	:	:	:	:	:

Description

AT3G63190 (E=4e-084) RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)

Coordinates

chrA09:-:30611513..30612979

Molecular Weight (calculated)

29409.7 Da

IEP (calculated)

10.052

GRAVY (calculated)

-0.451

Length

264 amino acids

Sequence
(BLAST)

001: MVSLSSTAHT IPPVLRFRAT DSKSLSDSFW KSRVIACCVR SENLVKLGAG VNLSRGPVVK PSLQKRVVIR FATIEEIEAE KSAIEKDVKS KMEKTIETLR
101: TSFNAIRTGR ANVAMLDKIE VEYYGSPVSL KSIAQTSTPD GTSLLLQPYD KSSLKAIEKA ILSSDLGMTP NNDGDVIRLS MPPLTSERRK ELTKVVAKQS
201: EEGKVALRNI RRDALKSYDK LEKEKKLSED NLKDMSSDLQ KLVDTYMKKI EELCKQKEKV SPAT

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.