Factsheet for Bra040427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89180	Canola	plastid	100.0	100.0
AT3G63190.1	Thale cress	plastid	69.51	77.09
Bra007733.1-P	Field mustard	plastid	64.92	75.0
KRH71423	Soybean	plastid	54.75	63.98
VIT_07s0151g01110.t01	Wine grape	plastid	55.74	62.04
Solyc09g065270.2.1	Tomato	plastid	52.79	60.3
PGSC0003DMT400049841	Potato	cytosol, extracellular	52.46	59.93
Zm00001d049694_P004	Maize	plastid	51.8	59.85
Os07t0570700-01	Rice	plasma membrane, plastid	51.48	59.02
GSMUA_Achr7P07510_001	Banana	plastid	54.1	58.72
KXG24244	Sorghum	plastid	50.82	58.49
KRH32022	Soybean	mitochondrion	54.75	57.19
TraesCS2A01G197900.1	Wheat	plastid	49.84	57.14
TraesCS2B01G225300.1	Wheat	plastid	49.84	57.14
TraesCS2D01G205900.2	Wheat	plastid	49.51	56.77
HORVU2Hr1G038570.2	Barley	plastid	49.51	51.71
Zm00001d035051_P001	Maize	plastid	49.84	50.84
Bra000988.1-P	Field mustard	mitochondrion	23.28	26.49

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EnsemblPlantsGene:Bra040427	EnsemblPlants:Bra040427.1	EnsemblPlants:Bra040427.1-P
ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:M4FH49	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI000254542D
SEG:seg	:	:	:	:	:

Description

AT3G63190 (E=1e-096) RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)

Coordinates

chrA04:-:160297..161962

Molecular Weight (calculated)

33466.6 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.269

Length

305 amino acids

Sequence
(BLAST)

001: MAASTAQSIP ILRFRANDSK SLVSLPGSCL RVMASDKASS ARAIACSLRS DIPWLGAGVK LSGGGVPVVK RVVIRSATIE EIEAEKSAIE KDVKAKMEKT
101: IETLRTSFNS IRTGRANVAM LDKIEVEYYG SPVSLKSIAQ ISTPDGTSLL LQPYDKSSLK AIEKAIVNSD LGVTPNNDGD VIRLSLPPLT SERRKELTKV
201: VAKQSEEGKV ALRNIRRDAL KSYDKLEKEK KLSEDNVKDL SSDLQKLIDT YMKKVEELSK QKEKVSQLLS TLFCVYGSGL YFCLRSIDKV ESPLITTKLK
301: SVHNT

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.