Factsheet for GSMUA_Achr7P07510_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0151g01110.t01	Wine grape	plastid	66.55	68.25
KRH71423	Soybean	plastid	62.63	67.43
PGSC0003DMT400049841	Potato	cytosol, extracellular	62.63	65.92
Solyc09g065270.2.1	Tomato	plastid	61.92	65.17
Os07t0570700-01	Rice	plasma membrane, plastid	61.57	65.04
TraesCS2D01G205900.2	Wheat	plastid	60.5	63.91
TraesCS2B01G225300.1	Wheat	plastid	60.5	63.91
Zm00001d049694_P004	Maize	plastid	59.79	63.64
CDY56458	Canola	plastid	59.79	63.64
TraesCS2A01G197900.1	Wheat	plastid	60.14	63.53
AT3G63190.1	Thale cress	plastid	61.57	62.91
KXG24244	Sorghum	plastid	59.07	62.64
CDX76687	Canola	plastid	58.36	62.12
Bra007733.1-P	Field mustard	plastid	58.36	62.12
CDX93926	Canola	plastid	58.72	61.11
HORVU2Hr1G038570.2	Barley	plastid	59.79	57.53
KRH32022	Soybean	mitochondrion	59.79	57.53
Zm00001d035051_P001	Maize	plastid	57.65	54.18
CDX89180	Canola	plastid	58.72	54.1
Bra040427.1-P	Field mustard	plastid	58.72	54.1
GSMUA_Achr10P...	Banana	mitochondrion	25.98	27.14

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742	EnsemblPlantsGene:GSMUA_Achr7G07510_001	EnsemblPlants:GSMUA_Achr7P07510_001
EnsemblPlants:GSMUA_Achr7T07510_001	UniProt:M0TFJ1	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI0002964538
SEG:seg	:	:	:	:	:

Description

Ribosome-recycling factor, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G07510_001]

Coordinates

chr7:+:5620208..5631548

Molecular Weight (calculated)

30969.2 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.446

Length

281 amino acids

Sequence
(BLAST)

001: MALRSFSPAA SARSVHPSLT AASLLPSRTG SIISAPGNIR GGNISLGKHM SSLSSSSNYV RLQEGVNAFF SSLLVSRNSK RRARVLRCAT IEEIEAEKSV
101: IEKDAKERME KTIETVRASF NAVRTGRANP SMLDRVEVEY YGSPVSLKSI AQISTPDGST LLVQPYDKSS LKAVEKAIVS SDIGLTPNND GEVIRLSIPQ
201: LTSERRKELS KVVAKLTEEG KVAVRNIRRD AIKAYEKLEK EKKLSEDNVK DLSSDLQKVT DEYMKKIETI QKQKEKELLS V

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.