Factsheet for PGSC0003DMT400049841

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065270.2.1	Tomato	plastid	98.88	98.88
VIT_07s0151g01110.t01	Wine grape	plastid	70.41	68.61
KRH71423	Soybean	plastid	65.54	67.05
GSMUA_Achr7P07510_001	Banana	plastid	65.92	62.63
CDY56458	Canola	plastid	59.93	60.61
CDX93926	Canola	plastid	61.05	60.37
KRH32022	Soybean	mitochondrion	65.92	60.27
Zm00001d049694_P004	Maize	plastid	59.55	60.23
Os07t0570700-01	Rice	plasma membrane, plastid	59.93	60.15
AT3G63190.1	Thale cress	plastid	61.8	60.0
CDX76687	Canola	plastid	58.8	59.47
KXG24244	Sorghum	plastid	58.8	59.25
Bra007733.1-P	Field mustard	plastid	58.43	59.09
TraesCS2A01G197900.1	Wheat	plastid	58.43	58.65
TraesCS2B01G225300.1	Wheat	plastid	58.43	58.65
TraesCS2D01G205900.2	Wheat	plastid	58.43	58.65
Zm00001d035051_P001	Maize	plastid	59.55	53.18
HORVU2Hr1G038570.2	Barley	plastid	58.05	53.08
CDX89180	Canola	plastid	59.93	52.46
Bra040427.1-P	Field mustard	plastid	59.93	52.46
PGSC0003DMT400070269	Potato	mitochondrion	26.22	25.0

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:102588362	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742	UniProt:M1BPE8
HAMAP:MF_00040	PFAM:PF01765	EnsemblPlantsGene:PGSC0003DMG400019363	PGSC:PGSC0003DMG400019363	EnsemblPlants:PGSC0003DMT400049841	PANTHER:PTHR20982
PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496
UniParc:UPI000294C4A3	RefSeq:XP_006349681.1	SEG:seg	:	:	:

Description

Ribosome-recycling factor, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019363]

Coordinates

chr9:+:47746287..47753349

Molecular Weight (calculated)

29999.2 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.457

Length

267 amino acids

Sequence
(BLAST)

001: MTIVLSPATP VRLLCQQQLT RKPVLFCFQD KFPTSGNVVC WSASANYSSL WVGARRLQPL VKPSWGKRSG IVRCATIEEI EAEKSSIEKD VKERMEKTVE
101: TVRSNFNSIR TGRASPAMLD KIEVDYYGTP VSLKSIAQIS TPDASSILVQ PYDKSSLKAI EKAIVSSDVG MTPNNDGEVI RLAVPQLTSD RRKELSKIVS
201: KQAEEGKVAI RNIRRDALKA YEKLEKEKKL SEDNVKDLSS DLQKVTDEYM KKIDTVFKQK EKELLKV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.