Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56458 | Canola | plastid | 76.0 | 79.17 |
| CDX93926 | Canola | plastid | 76.0 | 77.41 |
| Bra007733.1-P | Field mustard | plastid | 74.18 | 77.27 |
| CDX76687 | Canola | plastid | 73.09 | 76.14 |
| Bra040427.1-P | Field mustard | plastid | 77.09 | 69.51 |
| CDX89180 | Canola | plastid | 77.09 | 69.51 |
| KRH71423 | Soybean | plastid | 63.27 | 66.67 |
| VIT_07s0151g01110.t01 | Wine grape | plastid | 63.27 | 63.5 |
| PGSC0003DMT400049841 | Potato | cytosol, extracellular | 60.0 | 61.8 |
| GSMUA_Achr7P07510_001 | Banana | plastid | 62.91 | 61.57 |
| Solyc09g065270.2.1 | Tomato | plastid | 59.64 | 61.42 |
| Zm00001d049694_P004 | Maize | plastid | 57.45 | 59.85 |
| Os07t0570700-01 | Rice | plasma membrane, plastid | 57.45 | 59.4 |
| KXG24244 | Sorghum | plastid | 57.09 | 59.25 |
| TraesCS2A01G197900.1 | Wheat | plastid | 57.09 | 59.02 |
| TraesCS2B01G225300.1 | Wheat | plastid | 57.09 | 59.02 |
| TraesCS2D01G205900.2 | Wheat | plastid | 57.09 | 59.02 |
| KRH32022 | Soybean | mitochondrion | 62.55 | 58.9 |
| HORVU2Hr1G038570.2 | Barley | plastid | 56.0 | 52.74 |
| Zm00001d035051_P001 | Maize | plastid | 55.27 | 50.84 |
| AT3G01800.1 | Thale cress | mitochondrion | 27.27 | 28.09 |
Protein Annotations
| Gene3D:1.10.132.20 | MapMan:17.7.5.3 | Gene3D:3.30.1360.40 | EntrezGene:825494 | ProteinID:AEE80446.1 | EMBL:AF372883 |
| ArrayExpress:AT3G63190 | EnsemblPlantsGene:AT3G63190 | RefSeq:AT3G63190 | TAIR:AT3G63190 | RefSeq:AT3G63190-TAIR-G | EnsemblPlants:AT3G63190.1 |
| TAIR:AT3G63190.1 | EMBL:AY056778 | EMBL:AY092982 | Unigene:At.19134 | EMBL:BT002678 | ProteinID:CAB86420.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0002184 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006412 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009658 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009817 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0032544 | GO:GO:0042742 | GO:GO:0043023 | HAMAP:MF_00040 | RefSeq:NP_567141.1 |
| PFAM:PF01765 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR20982 | PANTHER:PTHR20982:SF8 |
| UniProt:Q9M1X0 | Symbol:RRF | InterPro:RRF_sf | InterPro:Ribosome_recyc_fac | InterPro:Ribosome_recyc_fac_dom | SUPFAM:SSF55194 |
| TIGRFAMs:TIGR00496 | UniParc:UPI000000BD8D | SEG:seg | : | : | : |
Description
RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
Coordinates
chr3:-:23342550..23344801
Molecular Weight (calculated)
30423.8 Da
IEP (calculated)
10.054
GRAVY (calculated)
-0.390
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.