CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32022	Soybean	mitochondrion	77.01	68.84
PGSC0003DMT400049841	Potato	cytosol, extracellular	67.05	65.54
Solyc09g065270.2.1	Tomato	plastid	66.28	64.79
VIT_07s0151g01110.t01	Wine grape	plastid	67.05	63.87
AT3G63190.1	Thale cress	plastid	66.67	63.27
GSMUA_Achr7P07510_001	Banana	plastid	67.43	62.63
CDX93926	Canola	plastid	63.6	61.48
CDY56458	Canola	plastid	61.69	60.98
Bra007733.1-P	Field mustard	plastid	60.54	59.85
CDX76687	Canola	plastid	60.54	59.85
Os07t0570700-01	Rice	plasma membrane, plastid	59.39	58.27
KXG24244	Sorghum	plastid	59.0	58.11
Zm00001d049694_P004	Maize	plastid	58.62	57.95
TraesCS2A01G197900.1	Wheat	plastid	59.0	57.89
TraesCS2B01G225300.1	Wheat	plastid	59.0	57.89
TraesCS2D01G205900.2	Wheat	plastid	59.0	57.89
CDX89180	Canola	plastid	63.98	54.75
Bra040427.1-P	Field mustard	plastid	63.98	54.75
HORVU2Hr1G038570.2	Barley	plastid	58.24	52.05
Zm00001d035051_P001	Maize	plastid	57.85	50.5
KRH20683	Soybean	mitochondrion, nucleus	29.89	29.89
KRH13338	Soybean	cytosol	19.16	25.77

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:100794560	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:ACUP02000898	EMBL:BT095264
UniProt:C6TCH7	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G147000	GO:GO:0002184	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0043023	EnsemblPlants:KRH71423	ProteinID:KRH71423
ProteinID:KRH71423.1	ProteinID:KRH71424.1	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI0001B160FC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:15169923..15173924

Molecular Weight (calculated)

28993.9 Da

IEP (calculated)

10.213

GRAVY (calculated)

-0.486

Length

261 amino acids

Sequence
(BLAST)

001: MATSFSPTAS VGSIIFQNPP KGLLLLSQQQ QQRSFASSAS YATLKLPRAF ALSPRPLLSK GRTTLVRAAT IEEIEAEKAA IEKDAKTRMD RTIDNVRTNF
101: SSIRTGRANP SMLDKIQVEY YGSPVSLKSI AQISTPDASS LLVQPYDKSS LKAIEKAIVS SDLGMTPNND GELIRLSIPQ LTSDRRKELS KIVAKQAEEG
201: KVALRNIRRD ALKAYDKLEK EKKLSEDNVK DLSSDLQKLT DEYMKKVDTI FKQKEKELLT V

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.