CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13338	Soybean	cytosol	55.56	74.74
VIT_14s0171g00220.t01	Wine grape	mitochondrion	68.58	69.38
AT3G01800.1	Thale cress	mitochondrion	62.07	60.67
CDX91926	Canola	mitochondrion	61.3	59.7
Bra000988.1-P	Field mustard	mitochondrion	60.92	59.33
CDX74319	Canola	mitochondrion	60.54	58.74
Os04t0490400-01	Rice	mitochondrion	57.47	57.69
TraesCS2A01G348100.1	Wheat	mitochondrion	57.47	57.69
TraesCS2B01G366500.1	Wheat	mitochondrion	57.47	57.69
TraesCS2D01G346400.1	Wheat	mitochondrion	57.47	57.69
PGSC0003DMT400070269	Potato	mitochondrion	61.69	57.5
Solyc11g007740.1.1	Tomato	mitochondrion	60.54	57.04
HORVU2Hr1G084680.4	Barley	plastid	42.53	56.35
EES12421	Sorghum	mitochondrion	55.56	56.2
GSMUA_Achr10P...	Banana	mitochondrion	56.32	54.65
Zm00001d025745_P001	Maize	mitochondrion	52.87	53.28
KRH71423	Soybean	plastid	29.89	29.89
KRH32022	Soybean	mitochondrion	28.74	25.68

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:ACUP02008292	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G194000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0043023	UniProt:I1M0P2	EnsemblPlants:KRH20683	ProteinID:KRH20683	ProteinID:KRH20683.1
PFAM:PF01765	PANTHER:PTHR20982	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194
UniParc:UPI000233BAC7	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:30721230..30724571

Molecular Weight (calculated)

28727.0 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.376

Length

261 amino acids

Sequence
(BLAST)

001: MMSGYVRRAF SYRNMLWLRN SGVVRGCDVW SPIQMCDSNR VLTLPATPNF VAESRRAFAK GRKSKDEGGA STIEVPPNAG PTIKANAVSQ MEAAMAALST
101: ELSKLRTGRA SPGMLDHIIV ETSGLKMPLN RLAVVSVLDP KTLSVNPYDP ETLKQLENAI VSSPLGLNPK SDGERLIAVI PPLTKEHMQA MTKLVAKSCE
201: DARQSIRRAR QKAMDAIKKL YSSLPKDDIK RLEKEVDDLT KKFIKSAEDI CKAKEKEISQ G

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.