CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025745_P001	Maize	mitochondrion	91.09	90.73
Os04t0490400-01	Rice	mitochondrion	86.82	86.15
TraesCS2B01G366500.1	Wheat	mitochondrion	81.01	80.38
TraesCS2D01G346400.1	Wheat	mitochondrion	80.62	80.0
TraesCS2A01G348100.1	Wheat	mitochondrion	80.62	80.0
HORVU2Hr1G084680.4	Barley	plastid	56.59	74.11
VIT_14s0171g00220.t01	Wine grape	mitochondrion	62.79	62.79
GSMUA_Achr10P...	Banana	mitochondrion	63.18	60.59
CDX74319	Canola	mitochondrion	60.08	57.62
CDX91926	Canola	mitochondrion	59.69	57.46
AT3G01800.1	Thale cress	mitochondrion	59.3	57.3
Bra000988.1-P	Field mustard	mitochondrion	58.91	56.72
KRH20683	Soybean	mitochondrion, nucleus	56.2	55.56
PGSC0003DMT400070269	Potato	mitochondrion	56.59	52.14
Solyc11g007740.1.1	Tomato	mitochondrion	55.81	51.99
KRH13338	Soybean	cytosol	37.98	50.52
KXG24244	Sorghum	plastid	28.29	27.55

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EntrezGene:8073704	UniProt:C5YBC4	ncoils:Coil
EnsemblPlants:EES12421	ProteinID:EES12421	ProteinID:EES12421.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043023	PFAM:PF01765
PANTHER:PTHR20982	PANTHER:PTHR20982:SF3	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	EnsemblPlantsGene:SORBI_3006G129900
SUPFAM:SSF55194	unigene:Sbi.5962	UniParc:UPI0001A87609	RefSeq:XP_002448093.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:49442450..49445381

Molecular Weight (calculated)

27579.6 Da

IEP (calculated)

10.720

GRAVY (calculated)

-0.213

Length

258 amino acids

Sequence
(BLAST)

001: MALLLRRGAA LAARSFRAAA ASASTTVRRL PAGGSLAGAG EFAPSRLFVF ENRRGFAKGK KSKDDRGDTV QAVPDIGPTV KSAATAQMDA AVIALSRELS
101: KLRTGRATPG MLDHIMVENA GVKVALNRIA VVSVLDAHTL SVMPYDPTSM KSIEHAIISS PLGINPTPDG NRIIAAIPPL TKENIQALCK VVTKSAEDFK
201: QSIRRARQKA LDTIKKSASS MPKDDVKRIE KEVEELTKKF IKSADDMCKA KEKEISGS

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.