CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049694_P004	Maize	plastid	92.08	92.42
Zm00001d035051_P001	Maize	plastid	93.21	82.61
Os07t0570700-01	Rice	plasma membrane, plastid	82.64	82.33
TraesCS2D01G205900.2	Wheat	plastid	76.98	76.69
TraesCS2A01G197900.1	Wheat	plastid	76.98	76.69
TraesCS2B01G225300.1	Wheat	plastid	76.6	76.32
HORVU2Hr1G038570.2	Barley	plastid	76.23	69.18
Solyc09g065270.2.1	Tomato	plastid	59.62	59.18
GSMUA_Achr7P07510_001	Banana	plastid	62.64	59.07
KRH71423	Soybean	plastid	58.11	59.0
CDX93926	Canola	plastid	60.0	58.89
PGSC0003DMT400049841	Potato	cytosol, extracellular	59.25	58.8
VIT_07s0151g01110.t01	Wine grape	plastid	60.38	58.39
CDY56458	Canola	plastid	57.74	57.95
Bra007733.1-P	Field mustard	plastid	57.36	57.58
AT3G63190.1	Thale cress	plastid	59.25	57.09
CDX76687	Canola	plastid	56.23	56.44
CDX89180	Canola	plastid	58.49	50.82
Bra040427.1-P	Field mustard	plastid	58.49	50.82
KRH32022	Soybean	mitochondrion	55.85	50.68
EES12421	Sorghum	mitochondrion	27.55	28.29

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EntrezGene:8066076	UniProt:A0A1B6PEY5	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009817	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742
EnsemblPlants:KXG24244	ProteinID:KXG24244	ProteinID:KXG24244.2	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982
PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	EnsemblPlantsGene:SORBI_3007G013400	SUPFAM:SSF55194
TIGRFAMs:TIGR00496	UniParc:UPI0001A87917	RefSeq:XP_002444910.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:1193305..1197192

Molecular Weight (calculated)

29377.6 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.420

Length

265 amino acids

Sequence
(BLAST)

001: MALHAVSPAA VSSPLRALSR SLPQRPGCGC LPKQSLAVYS SINFARLRAG PVDFGGRPLV LRHSDKRAVL MHATIEEIEA EKSLIEDQAK EKMEKAIETV
101: QTNFNTVRTG RANPAMLDRI EVEYYGTPVN LKSIAQISTP DATSLLIQPY DKSSLKLIEK TIVAANLGVT PSNDGEVIRV TVPPLTSDRR KELAKTVAKL
201: SEDGKVAIRN IRRDAIKAYD KLQKEKKLSE DNVKDLSADL QKVTDEYMKK IDSIQKQKEQ ELMKI

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.