Factsheet for VIT_07s0151g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049841	Potato	cytosol, extracellular	68.61	70.41
Solyc09g065270.2.1	Tomato	plastid	68.25	70.04
KRH71423	Soybean	plastid	63.87	67.05
GSMUA_Achr7P07510_001	Banana	plastid	68.25	66.55
CDY56458	Canola	plastid	62.77	65.15
CDX93926	Canola	plastid	63.5	64.44
AT3G63190.1	Thale cress	plastid	63.5	63.27
CDX76687	Canola	plastid	60.95	63.26
Bra007733.1-P	Field mustard	plastid	60.58	62.88
Os07t0570700-01	Rice	plasma membrane, plastid	59.12	60.9
Zm00001d049694_P004	Maize	plastid	58.39	60.61
KXG24244	Sorghum	plastid	58.39	60.38
KRH32022	Soybean	mitochondrion	62.41	58.56
TraesCS2A01G197900.1	Wheat	plastid	56.57	58.27
TraesCS2B01G225300.1	Wheat	plastid	56.57	58.27
TraesCS2D01G205900.2	Wheat	plastid	56.57	58.27
CDX89180	Canola	plastid	62.04	55.74
Bra040427.1-P	Field mustard	plastid	62.04	55.74
HORVU2Hr1G038570.2	Barley	plastid	56.57	53.08
Zm00001d035051_P001	Maize	plastid	57.66	52.84
VIT_14s0171g00220.t01	Wine grape	mitochondrion	26.28	27.91

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:100263214	wikigene:100263214	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:AM476389
ProteinID:CAN77406	ProteinID:CAN77406.1	ProteinID:CBI28691	ProteinID:CBI28691.3	ncoils:Coil	UniProt:D7TDW8
EMBL:FN595764	GO:GO:0000003	GO:GO:0002184	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009658
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0032544	GO:GO:0042742	GO:GO:0043023	EntrezGene:LOC100263214	wikigene:LOC100263214
HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac
InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI0001BE32E5	ArrayExpress:VIT_07s0151g01110	EnsemblPlantsGene:VIT_07s0151g01110
EnsemblPlants:VIT_07s0151g01110.t01	unigene:Vvi.11714	RefSeq:XP_002272648	RefSeq:XP_002272648.1	RefSeq:XP_010651961.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:1297237..1305410

Molecular Weight (calculated)

30949.4 Da

IEP (calculated)

9.894

GRAVY (calculated)

-0.543

Length

274 amino acids

Sequence
(BLAST)

001: MAMTFSPATP VRTIFQRKSL SPGGCYCRGP GYEKCHLNIG IAFTLRSAAN YVRLGDGARE YSGKLFVAKR NFQKRTGIFR CATIEEIEAE KSSIEKDVKE
101: RMEKTIETVR TNFNSIRTGR ANPAILDRVE VEYYGTPVSL KSIAQISTPD SASLLVQPYD KSSLKVIEKA IVSSDLGLTP NNDGEVIRLS LPQLTSERRK
201: ELSKVVAKQT EEGKVALRNI RRDALKAYEK LEKDKKLSED NVKDLSSDLQ KLIDEYMKKI ETIYKQKEKE LLKV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.