Factsheet for VIT_14s0171g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20683	Soybean	mitochondrion, nucleus	69.38	68.58
AT3G01800.1	Thale cress	mitochondrion	68.99	66.67
Os04t0490400-01	Rice	mitochondrion	64.73	64.23
Bra000988.1-P	Field mustard	mitochondrion	66.28	63.81
CDX91926	Canola	mitochondrion	65.89	63.43
TraesCS2D01G346400.1	Wheat	mitochondrion	63.57	63.08
EES12421	Sorghum	mitochondrion	62.79	62.79
TraesCS2A01G348100.1	Wheat	mitochondrion	63.18	62.69
CDX74319	Canola	mitochondrion	65.12	62.45
HORVU2Hr1G084680.4	Barley	plastid	47.67	62.44
TraesCS2B01G366500.1	Wheat	mitochondrion	62.79	62.31
KRH13338	Soybean	cytosol	45.74	60.82
Zm00001d025745_P001	Maize	mitochondrion	60.85	60.62
GSMUA_Achr10P...	Banana	mitochondrion	61.24	58.74
PGSC0003DMT400070269	Potato	mitochondrion	62.4	57.5
Solyc11g007740.1.1	Tomato	mitochondrion	61.63	57.4
VIT_07s0151g01110.t01	Wine grape	plastid	27.91	26.28

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:100249298	wikigene:100249298	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:AM475033
ProteinID:CAN68423	ProteinID:CAN68423.1	ProteinID:CBI40061	ProteinID:CBI40061.3	ncoils:Coil	UniProt:D7UBE6
EMBL:FN596749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0043023	EntrezGene:LOC100249298	wikigene:LOC100249298	PFAM:PF01765
PANTHER:PTHR20982	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	UniParc:UPI00015C979A
ArrayExpress:VIT_14s0171g00220	EnsemblPlantsGene:VIT_14s0171g00220	EnsemblPlants:VIT_14s0171g00220.t01	unigene:Vvi.16529	RefSeq:XP_002263449	RefSeq:XP_002263449.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:26066339..26070944

Molecular Weight (calculated)

28001.2 Da

IEP (calculated)

10.189

GRAVY (calculated)

-0.222

Length

258 amino acids

Sequence
(BLAST)

001: MAISVRRAFS YRSILLLHCR HLSHIIHSPN LTGSPSLNPS ASSALDFLRE SRRGFAKGRK SKDSDAGNTV EVVPDIGPAV KENAMSQMDA AVVALSRELS
101: KLRTGRASAG MLDHIIVETG GVKMPLSRLA VVSVLDPKTL SVTPYDLDAL KQLENAIVSS PLGLNPKADG ERLIAVIPPL TKEHIQAMCK VVAKSCEDVK
201: QSIRRARQKA LDMIKKAGSS LPKDVAKRLE KEVDELTKKF VKSAEDMCKA KEKEIAEG

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.