Factsheet for TraesCS2D01G346400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G366500.1	Wheat	mitochondrion	99.23	99.23
TraesCS2A01G348100.1	Wheat	mitochondrion	99.23	99.23
HORVU2Hr1G084680.4	Barley	plastid	68.85	90.86
Os04t0490400-01	Rice	mitochondrion	83.85	83.85
Zm00001d025745_P001	Maize	mitochondrion	80.77	81.08
EES12421	Sorghum	mitochondrion	80.0	80.62
VIT_14s0171g00220.t01	Wine grape	mitochondrion	63.08	63.57
AT3G01800.1	Thale cress	mitochondrion	60.38	58.8
GSMUA_Achr10P...	Banana	mitochondrion	60.38	58.36
Bra000988.1-P	Field mustard	mitochondrion	60.0	58.21
CDX91926	Canola	mitochondrion	59.62	57.84
KRH20683	Soybean	mitochondrion, nucleus	57.69	57.47
CDX74319	Canola	mitochondrion	58.85	56.88
PGSC0003DMT400070269	Potato	mitochondrion	55.38	51.43
Solyc11g007740.1.1	Tomato	mitochondrion	54.23	50.9
KRH13338	Soybean	cytosol	37.69	50.52
TraesCS2D01G205900.2	Wheat	plastid	26.92	26.32

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF3
InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	EnsemblPlantsGene:TraesCS2D01G346400	EnsemblPlants:TraesCS2D01G346400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:443242572..443246837

Molecular Weight (calculated)

27821.8 Da

IEP (calculated)

10.653

GRAVY (calculated)

-0.257

Length

260 amino acids

Sequence
(BLAST)

001: MALLLRRGAA VAARTLRAAA ASSASTSIHR LPTAGSLAAA RNLPTTQFFL LEIRRGFAKG KKSKNDSRSD TVEAAPDIGP TVKSAATAQM DTAVVALSRE
101: LSKLRTGRAS PGMLDHIMVE TGDVKVGLSR IAVVSVLDSH TLSVMPYDPN TMKSIENAIA SSPLGINPTP DGSRIIAAVP PLTKETMQAM CKVVTKSAED
201: FKQSIRRARQ KALDTIKKSS SSMPKDDIKR LEKEVEELTK KFIKSADDMC KAKEKEISGS

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.