CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74319	Canola	mitochondrion	88.43	88.1
AT3G01800.1	Thale cress	mitochondrion	77.99	78.28
VIT_14s0171g00220.t01	Wine grape	mitochondrion	63.43	65.89
Os04t0490400-01	Rice	mitochondrion	60.07	61.92
KRH20683	Soybean	mitochondrion, nucleus	59.7	61.3
EES12421	Sorghum	mitochondrion	57.46	59.69
TraesCS2D01G346400.1	Wheat	mitochondrion	57.84	59.62
TraesCS2B01G366500.1	Wheat	mitochondrion	57.84	59.62
TraesCS2A01G348100.1	Wheat	mitochondrion	57.84	59.62
HORVU2Hr1G084680.4	Barley	plastid	43.66	59.39
GSMUA_Achr10P...	Banana	mitochondrion	58.96	58.74
Zm00001d025745_P001	Maize	mitochondrion	55.97	57.92
Solyc11g007740.1.1	Tomato	mitochondrion	58.58	56.68
PGSC0003DMT400070269	Potato	mitochondrion	58.58	56.07
KRH13338	Soybean	cytosol	39.93	55.15
CDX76687	Canola	plastid	27.99	28.41
CDY56458	Canola	plastid	27.24	27.65
CDX93926	Canola	plastid	27.61	27.41
CDX89180	Canola	plastid	26.49	23.28

Protein Annotations

EnsemblPlants:CDX91926	EnsemblPlantsGene:GSBRNA2T00153560001	Gene3D:1.10.132.20	Gene3D:3.30.1360.40	GO:A0A078DRK9	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	ncoils:Coil	PANTHER:PTHR20982	PFAM:PF01765	ProteinID:CDX91926
ProteinID:CDX91926.1	SUPFAM:SSF55194	UniParc:UPI0004EBB9D0	MapMan:17.7.5.3	:	:

Description

BnaC03g32280D

Coordinates

chrLK031870:-:864457..866173

Molecular Weight (calculated)

29113.5 Da

IEP (calculated)

10.527

GRAVY (calculated)

-0.351

Length

268 amino acids

Sequence
(BLAST)

001: MATMAMLVRR AASSRNAIAF LRRCSSSSLV VGRDYSHKAT TLLRAPDLDL KSPSFLRDSR RGFAKGKKSR DDSGGLVDVS PPVDIGPSVK ATATSQMEAA
101: IDALSRDLTK LRTGRASPGM LDHIVVETGG IKMPLNHLAL VSVLDPKTLS INPYDPDTVK ELEKAIVSSP LGLNPKLDGQ RLIASIPPLT KEHVQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTVKKGASGL PKDQVKRLEK EVEELTKKFV KSAEDMCKSK ENEITTQA

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.