CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040427.1-P	Field mustard	plastid	100.0	100.0
CDX93926	Canola	plastid	81.97	92.59
AT3G63190.1	Thale cress	plastid	69.51	77.09
CDY56458	Canola	plastid	65.25	75.38
CDX76687	Canola	plastid	62.95	72.73
KRH71423	Soybean	plastid	54.75	63.98
VIT_07s0151g01110.t01	Wine grape	plastid	55.74	62.04
Solyc09g065270.2.1	Tomato	plastid	52.79	60.3
PGSC0003DMT400049841	Potato	cytosol, extracellular	52.46	59.93
Zm00001d049694_P004	Maize	plastid	51.8	59.85
Os07t0570700-01	Rice	plasma membrane, plastid	51.48	59.02
GSMUA_Achr7P07510_001	Banana	plastid	54.1	58.72
KXG24244	Sorghum	plastid	50.82	58.49
KRH32022	Soybean	mitochondrion	54.75	57.19
TraesCS2A01G197900.1	Wheat	plastid	49.84	57.14
TraesCS2B01G225300.1	Wheat	plastid	49.84	57.14
TraesCS2D01G205900.2	Wheat	plastid	49.51	56.77
HORVU2Hr1G038570.2	Barley	plastid	49.51	51.71
Zm00001d035051_P001	Maize	plastid	49.84	50.84
CDX91926	Canola	mitochondrion	23.28	26.49
CDX74319	Canola	mitochondrion	23.28	26.39

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	GO:A0A078DJ08	EnsemblPlants:CDX89180	ProteinID:CDX89180
ProteinID:CDX89180.1	ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00149340001	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982
PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496
UniParc:UPI000254542D	SEG:seg	:	:	:	:

Description

BnaA04g00060D

Coordinates

chrLK031857:-:1601678..1603768

Molecular Weight (calculated)

33466.6 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.269

Length

305 amino acids

Sequence
(BLAST)

001: MAASTAQSIP ILRFRANDSK SLVSLPGSCL RVMASDKASS ARAIACSLRS DIPWLGAGVK LSGGGVPVVK RVVIRSATIE EIEAEKSAIE KDVKAKMEKT
101: IETLRTSFNS IRTGRANVAM LDKIEVEYYG SPVSLKSIAQ ISTPDGTSLL LQPYDKSSLK AIEKAIVNSD LGVTPNNDGD VIRLSLPPLT SERRKELTKV
201: VAKQSEEGKV ALRNIRRDAL KSYDKLEKEK KLSEDNVKDL SSDLQKLIDT YMKKVEELSK QKEKVSQLLS TLFCVYGSGL YFCLRSIDKV ESPLITTKLK
301: SVHNT

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.