Factsheet for Zm00001d049694_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24244	Sorghum	plastid	92.42	92.08
Os07t0570700-01	Rice	plasma membrane, plastid	81.44	80.83
Zm00001d035051_P001	Maize	plastid	91.29	80.6
TraesCS2D01G205900.2	Wheat	plastid	77.27	76.69
TraesCS2B01G225300.1	Wheat	plastid	76.89	76.32
TraesCS2A01G197900.1	Wheat	plastid	76.89	76.32
HORVU2Hr1G038570.2	Barley	plastid	76.52	69.18
Solyc09g065270.2.1	Tomato	plastid	60.61	59.93
GSMUA_Achr7P07510_001	Banana	plastid	63.64	59.79
PGSC0003DMT400049841	Potato	cytosol, extracellular	60.23	59.55
CDX93926	Canola	plastid	60.23	58.89
KRH71423	Soybean	plastid	57.95	58.62
VIT_07s0151g01110.t01	Wine grape	plastid	60.61	58.39
AT3G63190.1	Thale cress	plastid	59.85	57.45
Bra007733.1-P	Field mustard	plastid	56.82	56.82
CDY56458	Canola	plastid	56.44	56.44
CDX76687	Canola	plastid	55.3	55.3
CDX89180	Canola	plastid	59.85	51.8
Bra040427.1-P	Field mustard	plastid	59.85	51.8
KRH32022	Soybean	mitochondrion	56.06	50.68
Zm00001d025745_P001	Maize	mitochondrion	26.14	26.64

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ProteinID:AQK51083.1	EMBL:BT069292	UniProt:C0PLX3
ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI000195D079	EnsemblPlantsGene:Zm00001d049694
EnsemblPlants:Zm00001d049694_P004	EnsemblPlants:Zm00001d049694_T004	SEG:seg	:	:	:

Description

Ribosome-recycling factor chloroplastic

Coordinates

chr4:+:40524300..40528241

Molecular Weight (calculated)

29217.4 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.422

Length

264 amino acids

Sequence
(BLAST)

001: MALHAVSSAA VSSPLRALSR SLPQRPGCGC LPKQSVMIYS TKFARPQAGP VDFAGRPLVL GRSDKRAVLM HATIEEIEAE KSLIEDQAKE KMEKAIETVQ
101: ANFNTVRTGR ANPAMLDRIE VEYYGTPVNL KSIAQISTPD ATSLLIQPYD KSSLKLIEKT IVAANLGVTP SNDGEVIRVT VPPLTSDRRK ELSKTVAKLA
201: EDGKVAIRNI RRDAIKAYDK LEKEKKLSED NVKDLSADLQ KVTDEYMKKI ESIQKQKEQE LMKI

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.