CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89180	Canola	plastid	92.59	81.97
AT3G63190.1	Thale cress	plastid	77.41	76.0
CDY56458	Canola	plastid	73.7	75.38
CDX76687	Canola	plastid	71.48	73.11
KRH71423	Soybean	plastid	61.48	63.6
VIT_07s0151g01110.t01	Wine grape	plastid	64.44	63.5
Solyc09g065270.2.1	Tomato	plastid	60.74	61.42
PGSC0003DMT400049841	Potato	cytosol, extracellular	60.37	61.05
Zm00001d049694_P004	Maize	plastid	58.89	60.23
KXG24244	Sorghum	plastid	58.89	60.0
Os07t0570700-01	Rice	plasma membrane, plastid	58.15	59.02
GSMUA_Achr7P07510_001	Banana	plastid	61.11	58.72
KRH32022	Soybean	mitochondrion	62.22	57.53
TraesCS2A01G197900.1	Wheat	plastid	56.3	57.14
TraesCS2B01G225300.1	Wheat	plastid	56.3	57.14
TraesCS2D01G205900.2	Wheat	plastid	55.93	56.77
HORVU2Hr1G038570.2	Barley	plastid	55.93	51.71
Zm00001d035051_P001	Maize	plastid	57.04	51.51
CDX74319	Canola	mitochondrion	27.78	27.88
CDX91926	Canola	mitochondrion	27.41	27.61

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	GO:A0A078DXA3	EnsemblPlants:CDX93926	ProteinID:CDX93926
ProteinID:CDX93926.1	ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00156751001	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982
PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496
UniParc:UPI0004EDB307	SEG:seg	:	:	:	:

Description

BnaC04g20850D

Coordinates

chrLK031878:+:723018..725145

Molecular Weight (calculated)

29534.7 Da

IEP (calculated)

9.967

GRAVY (calculated)

-0.370

Length

270 amino acids

Sequence
(BLAST)

001: MAASTAQSIP ILRFRANDSK SLVSLPVGSC LRVVASDKAS SARAIACSLR SDNPWLGAGV KLSGGGGPVV KRVVIRSATI EEIEAEKSAI EKDVKSKMEK
101: TIETLRTSFN SIRTGRANVA MLDKIEVEYY GSPVSLKSIA QISTPDGTSL LLQPYDKSSL KAIEKAIVNS DLGVTPNNDG DVIRLSLPPL TSERRKELTK
201: VVAKQSEDGK VALRNIRRDA LKSYDKLEKE KKLSEDNVKD LSSDLQKLID TYMKKVEDLC KQKEKELLKV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.