CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56458	Canola	plastid	93.94	93.94
Bra007733.1-P	Field mustard	plastid	90.91	90.91
AT3G63190.1	Thale cress	plastid	76.14	73.09
CDX93926	Canola	plastid	73.11	71.48
CDX89180	Canola	plastid	72.73	62.95
VIT_07s0151g01110.t01	Wine grape	plastid	63.26	60.95
KRH71423	Soybean	plastid	59.85	60.54
Solyc09g065270.2.1	Tomato	plastid	59.85	59.18
PGSC0003DMT400049841	Potato	cytosol, extracellular	59.47	58.8
GSMUA_Achr7P07510_001	Banana	plastid	62.12	58.36
KXG24244	Sorghum	plastid	56.44	56.23
Os07t0570700-01	Rice	plasma membrane, plastid	56.06	55.64
Zm00001d049694_P004	Maize	plastid	55.3	55.3
TraesCS2A01G197900.1	Wheat	plastid	55.3	54.89
TraesCS2B01G225300.1	Wheat	plastid	55.3	54.89
TraesCS2D01G205900.2	Wheat	plastid	55.3	54.89
KRH32022	Soybean	mitochondrion	59.09	53.42
HORVU2Hr1G038570.2	Barley	plastid	54.55	49.32
Zm00001d035051_P001	Maize	plastid	54.17	47.83
CDX91926	Canola	mitochondrion	28.41	27.99
CDX74319	Canola	mitochondrion	28.41	27.88

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	GO:A0A078CIV3	EnsemblPlants:CDX76687	ProteinID:CDX76687
ProteinID:CDX76687.1	ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00127163001	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982
PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496
UniParc:UPI0004EDB521	SEG:seg	:	:	:	:

Description

BnaC08g32730D

Coordinates

chrLK031808:-:516445..518382

Molecular Weight (calculated)

29433.7 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.467

Length

264 amino acids

Sequence
(BLAST)

001: MASLSSTAHT IPPVLRSRPT DSKSLSDSFW KSRVIACCLR SENLVKLGAG VNLSRDPVVK RSLQKRVVIR SATIEEIEAE KSAIEKDVKS KMEKTIETLR
101: TSFNAIRTGR ANVAMLDKIE VEYYGSPVSL KSIAQISTPD GTSLLLQPYD KSSLKAIEKA ILSSDLGMTP NSDGDVIRLS LPPLTSERRK ELTKFVAKQF
201: EEGKVALRNL RRDALKSCDK LEKEKKLSED NLKDMSSDLQ KLVDTYMKKI EELCKQKEKV SPAT

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.