CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000988.1-P	Field mustard	mitochondrion	89.96	90.3
CDX91926	Canola	mitochondrion	88.1	88.43
AT3G01800.1	Thale cress	mitochondrion	76.95	77.53
VIT_14s0171g00220.t01	Wine grape	mitochondrion	62.45	65.12
Os04t0490400-01	Rice	mitochondrion	60.59	62.69
KRH20683	Soybean	mitochondrion, nucleus	58.74	60.54
EES12421	Sorghum	mitochondrion	57.62	60.08
TraesCS2D01G346400.1	Wheat	mitochondrion	56.88	58.85
TraesCS2B01G366500.1	Wheat	mitochondrion	56.88	58.85
TraesCS2A01G348100.1	Wheat	mitochondrion	56.88	58.85
GSMUA_Achr10P...	Banana	mitochondrion	58.74	58.74
HORVU2Hr1G084680.4	Barley	plastid	42.75	58.38
Zm00001d025745_P001	Maize	mitochondrion	55.02	57.14
Solyc11g007740.1.1	Tomato	mitochondrion	58.36	56.68
PGSC0003DMT400070269	Potato	mitochondrion	57.99	55.71
KRH13338	Soybean	cytosol	40.15	55.67
CDX76687	Canola	plastid	27.88	28.41
CDX93926	Canola	plastid	27.88	27.78
CDY56458	Canola	plastid	27.14	27.65
CDX89180	Canola	plastid	26.39	23.28

Protein Annotations

EnsemblPlants:CDX74319	EnsemblPlantsGene:GSBRNA2T00112112001	Gene3D:1.10.132.20	Gene3D:3.30.1360.40	GO:A0A078CDS8	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	ncoils:Coil	PANTHER:PTHR20982	PFAM:PF01765	ProteinID:CDX74319
ProteinID:CDX74319.1	SEG:seg	SUPFAM:SSF55194	UniParc:UPI0004EE80D8	MapMan:17.7.5.3	:

Description

BnaA03g27280D

Coordinates

chrLK031800:+:2181114..2182416

Molecular Weight (calculated)

29259.5 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.364

Length

269 amino acids

Sequence
(BLAST)

001: MAMFVRRAAT SRNAIAFLRR CSSSSSSLVV GRDYSHKATT LLRAPDLDLD LKLPSFLRDS RRGFAKGKKS RDDSGGLADV SPPVDIGPSV KATATSQMEA
101: AIDALSRDLT KLRTGRASPG MLDHIVVETG GLKMPLNHLA LVSVLDPKTL SINPYDPDTV KELEKAIVSS PLGLNPKLDG QRLIASIPPL TKEHVQAMCK
201: IVTKSSEVVK QSIRRARQKA LDTVKKGASG LPKDEVKRLE KEVEELTKKF VKSAEDMCKS KENEITTQA

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.