Factsheet for Bra000988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74319	Canola	mitochondrion	90.3	89.96
AT3G01800.1	Thale cress	mitochondrion	77.99	78.28
VIT_14s0171g00220.t01	Wine grape	mitochondrion	63.81	66.28
Os04t0490400-01	Rice	mitochondrion	59.7	61.54
KRH20683	Soybean	mitochondrion, nucleus	59.33	60.92
TraesCS2D01G346400.1	Wheat	mitochondrion	58.21	60.0
TraesCS2B01G366500.1	Wheat	mitochondrion	58.21	60.0
TraesCS2A01G348100.1	Wheat	mitochondrion	58.21	60.0
EES12421	Sorghum	mitochondrion	56.72	58.91
HORVU2Hr1G084680.4	Barley	plastid	43.28	58.88
GSMUA_Achr10P...	Banana	mitochondrion	58.58	58.36
Zm00001d025745_P001	Maize	mitochondrion	55.97	57.92
Solyc11g007740.1.1	Tomato	mitochondrion	58.58	56.68
PGSC0003DMT400070269	Potato	mitochondrion	58.58	56.07
KRH13338	Soybean	cytosol	39.93	55.15
Bra007733.1-P	Field mustard	plastid	26.49	26.89
Bra040427.1-P	Field mustard	plastid	26.49	23.28

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EnsemblPlantsGene:Bra000988	EnsemblPlants:Bra000988.1	EnsemblPlants:Bra000988.1-P
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:M4C9V9	PFAM:PF01765	PANTHER:PTHR20982	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom
SUPFAM:SSF55194	UniParc:UPI0002540786	SEG:seg	:	:	:

Description

AT3G01800 (E=7e-099) | ribosome recycling factor family protein / ribosome releasing factor family protein

Coordinates

chrA03:-:14286771..14288016

Molecular Weight (calculated)

29042.3 Da

IEP (calculated)

10.527

GRAVY (calculated)

-0.356

Length

268 amino acids

Sequence
(BLAST)

001: MAMLVRRAAS SRNAIAFLRR CSSSSSSSLV VGRNYSHKAT TLLRAPDLDL KLPSFLRDSR RGFAKGKKSR DDSGGLADVS PPVDIGPSVK ATATSQMEAA
101: IDALSRDLTK LRTGRASPGM LDHIVVETGG LKMPLSHLAL VSVLDPKTLS INPYDPDTVK ELEKAIVSSP LGLNPKLDGQ RLIASIPPLT KEHVQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTVKKGASGL PKDEVKRLEK EVEELTKKFV KSAEDMCKSK ENEITTQA

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.