Factsheet for Zm00001d025745_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12421	Sorghum	mitochondrion	90.73	91.09
Os04t0490400-01	Rice	mitochondrion	87.26	86.92
TraesCS2B01G366500.1	Wheat	mitochondrion	81.85	81.54
TraesCS2D01G346400.1	Wheat	mitochondrion	81.08	80.77
TraesCS2A01G348100.1	Wheat	mitochondrion	81.08	80.77
HORVU2Hr1G084680.4	Barley	plastid	55.98	73.6
VIT_14s0171g00220.t01	Wine grape	mitochondrion	60.62	60.85
GSMUA_Achr10P...	Banana	mitochondrion	59.46	57.25
Bra000988.1-P	Field mustard	mitochondrion	57.92	55.97
CDX91926	Canola	mitochondrion	57.92	55.97
AT3G01800.1	Thale cress	mitochondrion	57.14	55.43
CDX74319	Canola	mitochondrion	57.14	55.02
KRH20683	Soybean	mitochondrion, nucleus	53.28	52.87
PGSC0003DMT400070269	Potato	mitochondrion	54.44	50.36
Solyc11g007740.1.1	Tomato	mitochondrion	53.67	50.18
KRH13338	Soybean	cytosol	36.68	48.97
Zm00001d049694_P004	Maize	plastid	26.64	26.14
Zm00001d035051_P001	Maize	plastid	26.64	23.08

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:100282734	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ProteinID:AQK44457.1	UniProt:B6TAV8
EMBL:BT088357	ncoils:Coil	EMBL:EU962123	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF3	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	UniParc:UPI000182C8B8	EnsemblPlantsGene:Zm00001d025745	EnsemblPlants:Zm00001d025745_P001
EnsemblPlants:Zm00001d025745_T001	SEG:seg	:	:	:	:

Description

Ribosome recycling factor

Coordinates

chr10:-:128265758..128268623

Molecular Weight (calculated)

27774.7 Da

IEP (calculated)

10.510

GRAVY (calculated)

-0.212

Length

259 amino acids

Sequence
(BLAST)

001: MALLLRRGVA LAARSFRAAA ASSASTTVHR LPAGASLAGA GELAPAQLFF FENRRGFAKG KKSKDDRGDT VQAVPDIGPT VKSAATAQMD AAVIALSREL
101: SKLRTGRATP GMLDHIMVEN ADVKVALNRI AVVSVLDAHT LSVMPYDPTS MKSIEHAIIS SPLGINPTPD GNRIIAAIPP LTKENIQALC KVVTKSAEDF
201: KQSIRRARQK ALDTIKKSAS SMPKDDVKRI EKEIEELTKK FIKSSDDMCK AKEKEISGN

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.