Factsheet for Os04t0490400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025745_P001	Maize	mitochondrion	86.92	87.26
EES12421	Sorghum	mitochondrion	86.15	86.82
TraesCS2A01G348100.1	Wheat	mitochondrion	84.23	84.23
TraesCS2D01G346400.1	Wheat	mitochondrion	83.85	83.85
TraesCS2B01G366500.1	Wheat	mitochondrion	83.85	83.85
HORVU2Hr1G084680.4	Barley	plastid	57.69	76.14
VIT_14s0171g00220.t01	Wine grape	mitochondrion	64.23	64.73
GSMUA_Achr10P...	Banana	mitochondrion	63.08	60.97
CDX74319	Canola	mitochondrion	62.69	60.59
AT3G01800.1	Thale cress	mitochondrion	61.92	60.3
CDX91926	Canola	mitochondrion	61.92	60.07
Bra000988.1-P	Field mustard	mitochondrion	61.54	59.7
KRH20683	Soybean	mitochondrion, nucleus	57.69	57.47
KRH13338	Soybean	cytosol	39.23	52.58
PGSC0003DMT400070269	Potato	mitochondrion	56.54	52.5
Solyc11g007740.1.1	Tomato	mitochondrion	55.77	52.35
Os07t0570700-01	Rice	plasma membrane, plastid	27.69	27.07

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EntrezGene:4336241	EMBL:AK072486	ProteinID:BAF15077.1
ProteinID:BAS89836.1	ProteinID:CAD41132.1	ProteinID:CAE02486.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043023
EnsemblPlantsGene:Os04g0490400	EnsemblPlants:Os04t0490400-01	PFAM:PF01765	PANTHER:PTHR20982	UniProt:Q7X8U6	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI00001B0D0D	RefSeq:XP_015633929.1
SEG:seg	:	:	:	:	:

Description

Ribosome recycling factor family protein. (Os04t0490400-01)

Coordinates

chr4:-:24505544..24508396

Molecular Weight (calculated)

27838.8 Da

IEP (calculated)

10.625

GRAVY (calculated)

-0.273

Length

260 amino acids

Sequence
(BLAST)

001: MALFLRRGAA LAARSIRAAA ASSASTSVHR LPSVGSLAGA RELAPTKLFL LEARRGFAKG KKSKDDGRGD TVQDAPDIGP TVKSAATQQM EAAVVALSRE
101: LSKLRTGRAS PGMLDHIMVE TTGVKVALNR LAVVSVLDAH TLSVMPYDPS SMKSIEHAII SSPLGINPTP DGNRIIANIP PLTKENIQAL CKVVTKSAED
201: FKQSIRRARQ KALDTIKKSA SGMPKDDVKR LEKEVEELTK KFIKSADDMC KAKEKEISGN

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.