CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20683	Soybean	mitochondrion, nucleus	74.74	55.56
VIT_14s0171g00220.t01	Wine grape	mitochondrion	60.82	45.74
AT3G01800.1	Thale cress	mitochondrion	56.19	40.82
CDX74319	Canola	mitochondrion	55.67	40.15
Bra000988.1-P	Field mustard	mitochondrion	55.15	39.93
CDX91926	Canola	mitochondrion	55.15	39.93
Os04t0490400-01	Rice	mitochondrion	52.58	39.23
EES12421	Sorghum	mitochondrion	50.52	37.98
GSMUA_Achr10P...	Banana	mitochondrion	52.58	37.92
TraesCS2D01G346400.1	Wheat	mitochondrion	50.52	37.69
TraesCS2A01G348100.1	Wheat	mitochondrion	50.52	37.69
TraesCS2B01G366500.1	Wheat	mitochondrion	50.52	37.69
Solyc11g007740.1.1	Tomato	mitochondrion	53.09	37.18
PGSC0003DMT400070269	Potato	mitochondrion	53.09	36.79
Zm00001d025745_P001	Maize	mitochondrion	48.97	36.68
HORVU2Hr1G084680.4	Barley	plastid	35.05	34.52
KRH71423	Soybean	plastid	25.77	19.16
KRH32022	Soybean	mitochondrion	25.77	17.12

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:ACUP02009696	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G232300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0043023	UniProt:I1MIN6	EnsemblPlants:KRH13338	ProteinID:KRH13338	ProteinID:KRH13338.1
PFAM:PF01765	PANTHER:PTHR20982	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194
UniParc:UPI000294FBC1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:43692926..43694484

Molecular Weight (calculated)

21290.2 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.105

Length

194 amino acids

Sequence
(BLAST)

001: MVIGLYVLED EGGVGTIEVP PNVGPTIKAN AVSQMEAAMA ALAIPSEQAT YRKGIPRSSV SLDRMLDHII VETSGLKMPL NWLVVVFVLD QKTLQRECHI
101: VSSPLGLNPK SDGERLIAVI LPLTKEHIQA MTKLVAKSCE DASQSIRRAQ QKAMDAIKKL YSSLPKDDIK RLEKEVDDLT KKISKTAEDV CKVK

Best Arabidopsis Sequence Match ( AT3G01800.1 )
(BLAST)

001: MMAMFVRRAL SSRNAIGFLR RSSVVVQSRD FSFISSPNLM MMGGRDLQFD LSMPDFLRDS RRGFAKGKKS KDDSGTGMVD AAPDIGPTVK AAASSQMEAA
101: IDALSRDLTK LRTGRAAPGM LDHIVVETGG VKMPLNHLAL VSVLDPKTLS VNPYDPDTVK ELEKAIVASP LGLNPKLDGQ RLVASIPALT KEHIQAMCKI
201: VTKSSEVVKQ SIRRARQKAL DTIKKAGSSL PKDEVKRLEK EVDELTKKFV KSAEDMCKSK EKEITEA

Arabidopsis Description

At3g01800 [Source:UniProtKB/TrEMBL;Acc:Q6NQM0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.