CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71423	Soybean	plastid	68.84	77.01
PGSC0003DMT400049841	Potato	cytosol, extracellular	60.27	65.92
Solyc09g065270.2.1	Tomato	plastid	59.93	65.54
AT3G63190.1	Thale cress	plastid	58.9	62.55
VIT_07s0151g01110.t01	Wine grape	plastid	58.56	62.41
CDX93926	Canola	plastid	57.53	62.22
GSMUA_Achr7P07510_001	Banana	plastid	57.53	59.79
CDY56458	Canola	plastid	53.77	59.47
CDX76687	Canola	plastid	53.42	59.09
Bra007733.1-P	Field mustard	plastid	53.08	58.71
Os07t0570700-01	Rice	plasma membrane, plastid	53.42	58.65
Zm00001d049694_P004	Maize	plastid	50.68	56.06
TraesCS2A01G197900.1	Wheat	plastid	51.03	56.02
TraesCS2B01G225300.1	Wheat	plastid	51.03	56.02
TraesCS2D01G205900.2	Wheat	plastid	51.03	56.02
KXG24244	Sorghum	plastid	50.68	55.85
CDX89180	Canola	plastid	57.19	54.75
Bra040427.1-P	Field mustard	plastid	57.19	54.75
HORVU2Hr1G038570.2	Barley	plastid	51.03	51.03
Zm00001d035051_P001	Maize	plastid	50.0	48.83
KRH20683	Soybean	mitochondrion, nucleus	25.68	28.74
KRH13338	Soybean	cytosol	17.12	25.77

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	EMBL:ACUP02006093	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G026900
GO:GO:0002184	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0032544
GO:GO:0043023	UniProt:K7LH22	EnsemblPlants:KRH32022	ProteinID:KRH32022	ProteinID:KRH32022.1	HAMAP:MF_00040
PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom
SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI0002963265	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:2355449..2359930

Molecular Weight (calculated)

32923.5 Da

IEP (calculated)

10.089

GRAVY (calculated)

-0.632

Length

292 amino acids

Sequence
(BLAST)

001: MVMALWSGIA NWQRKKKEWR KLLSTTQHHQ RYTSLSDGNL DLFLSDSLCP LHHLPKAKPS QSPSSSLPAA LLRLFRKLCN SQAPSQTPPF QGRTPLVRAA
101: TIEEIEAEKA AIEKDAKSRM DRTIDNVRTN FSSIRTGRAN PAMLDKIEVE YYGSPVSLKS IAQISTPDAS SLLVQPYDKS SLKAIEKTIV SSDLGMTPNN
201: DGESIQLRIP QLTSDRRKEL SKIVAKQAEE GKVALRNIRR DALKAYDKLE KEKKLSEDNV KDLSSDLQKL TDEYMKKVDT IFKQKEKELL TV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.