CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76687	Canola	plastid	93.94	93.94
Bra007733.1-P	Field mustard	plastid	91.67	91.67
AT3G63190.1	Thale cress	plastid	79.17	76.0
CDX93926	Canola	plastid	75.38	73.7
CDX89180	Canola	plastid	75.38	65.25
VIT_07s0151g01110.t01	Wine grape	plastid	65.15	62.77
KRH71423	Soybean	plastid	60.98	61.69
Solyc09g065270.2.1	Tomato	plastid	60.98	60.3
PGSC0003DMT400049841	Potato	cytosol, extracellular	60.61	59.93
GSMUA_Achr7P07510_001	Banana	plastid	63.64	59.79
KXG24244	Sorghum	plastid	57.95	57.74
Os07t0570700-01	Rice	plasma membrane, plastid	57.58	57.14
Zm00001d049694_P004	Maize	plastid	56.44	56.44
TraesCS2A01G197900.1	Wheat	plastid	56.82	56.39
TraesCS2B01G225300.1	Wheat	plastid	56.82	56.39
TraesCS2D01G205900.2	Wheat	plastid	56.82	56.39
KRH32022	Soybean	mitochondrion	59.47	53.77
HORVU2Hr1G038570.2	Barley	plastid	56.06	50.68
Zm00001d035051_P001	Maize	plastid	55.3	48.83
CDX91926	Canola	mitochondrion	27.65	27.24
CDX74319	Canola	mitochondrion	27.65	27.14

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	GO:A0A078J2L7	UniProt:A0A078J2L7	EnsemblPlants:CDY56458
ProteinID:CDY56458	ProteinID:CDY56458.1	ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00019608001	HAMAP:MF_00040	PFAM:PF01765
PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194
TIGRFAMs:TIGR00496	UniParc:UPI0004EE02A7	SEG:seg	:	:	:

Description

BnaA09g55740DBnaA09g55740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2L7]

Coordinates

chrLK033491:+:46609..48528

Molecular Weight (calculated)

29204.6 Da

IEP (calculated)

10.199

GRAVY (calculated)

-0.396

Length

264 amino acids

Sequence
(BLAST)

001: MASLSSTAHT IPPVLRFRAT DSKSLSVAPA KSRVIACCVR SENLVKLGAG VILSRGPVVK RSLQKRLVIR SATIEEIEAE KSAIEKDVKT KMEKTIETLR
101: TSFNAIRTGR ANVAMLDKIE VEYYGSPVSL KSIAQISTPD GTSLLLQPYD KSSLKAIEKA ILSSDLGMTP NNDGDVIRLS LPPLTSERRK ELTKVVAKQS
201: EEGKVALRNI RRDALKSYDK LEKEKKLSED NLKDMSSDLQ KLVDTYMKKI EELCKQKEKV SPAT

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.