Factsheet for TraesCS2A01G197900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G205900.2	Wheat	plastid	99.25	99.25
TraesCS2B01G225300.1	Wheat	plastid	99.25	99.25
HORVU2Hr1G038570.2	Barley	plastid	97.37	88.7
Os07t0570700-01	Rice	plasma membrane, plastid	78.2	78.2
KXG24244	Sorghum	plastid	76.69	76.98
Zm00001d049694_P004	Maize	plastid	76.32	76.89
Zm00001d035051_P001	Maize	plastid	74.81	66.56
GSMUA_Achr7P07510_001	Banana	plastid	63.53	60.14
KRH71423	Soybean	plastid	57.89	59.0
Solyc09g065270.2.1	Tomato	plastid	59.02	58.8
PGSC0003DMT400049841	Potato	cytosol, extracellular	58.65	58.43
AT3G63190.1	Thale cress	plastid	59.02	57.09
CDY56458	Canola	plastid	56.39	56.82
VIT_07s0151g01110.t01	Wine grape	plastid	58.27	56.57
CDX93926	Canola	plastid	57.14	56.3
CDX76687	Canola	plastid	54.89	55.3
Bra007733.1-P	Field mustard	plastid	54.89	55.3
KRH32022	Soybean	mitochondrion	56.02	51.03
CDX89180	Canola	plastid	57.14	49.84
Bra040427.1-P	Field mustard	plastid	57.14	49.84
TraesCS2A01G348100.1	Wheat	mitochondrion	26.32	26.92

Protein Annotations

Gene3D:1.10.132.20	MapMan:17.7.5.3	Gene3D:3.30.1360.40	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009817	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0032544	GO:GO:0042742	HAMAP:MF_00040	PFAM:PF01765
PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf	InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194
TIGRFAMs:TIGR00496	EnsemblPlantsGene:TraesCS2A01G197900	EnsemblPlants:TraesCS2A01G197900.1	TIGR:cd00520	SEG:seg	:

Description

No Description!

Coordinates

chr2A:-:168981151..168984931

Molecular Weight (calculated)

29425.4 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.442

Length

266 amino acids

Sequence
(BLAST)

001: MALHAVSPAA AASPPCALSS ARLPQRPGCG CLSNRSSLLS SSTNFMKFHS GAVGFFGVPL VLQHSDKRAV LRHATNEEIE EEKMIVEEQA KEKMEKAIET
101: VQSNFNTVRT GRANPSMLDR IEVEYYGTPV NLKTIAQINT PDATSLLIQP YDKSCLKLIE KAIVAANIGV TPSNDGEVIR VTVPPLTSDR RKEMTKTVAK
201: LSEEGKVAIR NIRRDAIKAY DKLEKEKKLS EDNVKDLSAD LQKITDEYMK KVEAIQKQKE QELSKV

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.