Factsheet for Zm00001d035051_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24244	Sorghum	plastid	82.61	93.21
Zm00001d049694_P004	Maize	plastid	80.6	91.29
Os07t0570700-01	Rice	plasma membrane, plastid	71.24	80.08
TraesCS2D01G205900.2	Wheat	plastid	66.56	74.81
TraesCS2A01G197900.1	Wheat	plastid	66.56	74.81
TraesCS2B01G225300.1	Wheat	plastid	66.22	74.44
HORVU2Hr1G038570.2	Barley	plastid	65.89	67.47
Solyc09g065270.2.1	Tomato	plastid	53.51	59.93
PGSC0003DMT400049841	Potato	cytosol, extracellular	53.18	59.55
KRH71423	Soybean	plastid	50.5	57.85
VIT_07s0151g01110.t01	Wine grape	plastid	52.84	57.66
GSMUA_Achr7P07510_001	Banana	plastid	54.18	57.65
CDX93926	Canola	plastid	51.51	57.04
CDY56458	Canola	plastid	48.83	55.3
Bra007733.1-P	Field mustard	plastid	48.83	55.3
AT3G63190.1	Thale cress	plastid	50.84	55.27
CDX76687	Canola	plastid	47.83	54.17
KRH32022	Soybean	mitochondrion	48.83	50.0
CDX89180	Canola	plastid	50.84	49.84
Bra040427.1-P	Field mustard	plastid	50.84	49.84
Zm00001d025745_P001	Maize	mitochondrion	23.08	26.64

Protein Annotations

Gene3D:1.10.132.20	EntrezGene:100217177	MapMan:17.7.5.3	Gene3D:3.30.1360.40	UniProt:A0A1D6LE43	ProteinID:AQK78241.1
ncoils:Coil	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	HAMAP:MF_00040	PFAM:PF01765	PANTHER:PTHR20982	PANTHER:PTHR20982:SF8	InterPro:RRF_sf
InterPro:Ribosome_recyc_fac	InterPro:Ribosome_recyc_fac_dom	SUPFAM:SSF55194	TIGRFAMs:TIGR00496	UniParc:UPI000843C820	EnsemblPlantsGene:Zm00001d035051
EnsemblPlants:Zm00001d035051_P001	EnsemblPlants:Zm00001d035051_T001	SEG:seg	:	:	:

Description

Ribosome-recycling factor chloroplastic

Coordinates

chr6:-:3226476..3230772

Molecular Weight (calculated)

33343.3 Da

IEP (calculated)

9.772

GRAVY (calculated)

-0.368

Length

299 amino acids

Sequence
(BLAST)

001: MALHAVSPAA VSSPLRALSR SLPQRSGCGC LPKQSVTICS STNFARKLQD GPVDFAARRL VLGHSDKRRV VTDIACHSHV IRAVLTHATI EEIEAEKSLI
101: EDQAKEKMEK AIETVQTNFN TVRTGRASPA MLDRIEVEYY GTPVNLKSIA QISTPDATSL LIQPYDKSSL KLIEKTIVAA NLGVTPSNDG EVIRVTVPPL
201: TSDRRKEIFS STFRIVTLWK PRYMQELAKT VAKLAEDGKV AIRNIRRDAI KAYDKLQKEK KLSEDNVKDL SADLQKVTDE YMKNIDSIQK QKEQELMKI

Best Arabidopsis Sequence Match ( AT3G63190.1 )
(BLAST)

001: MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK
101: SKMEKTIETL RTSFNSIRTG RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT PNNDGDVIRL SLPPLTSDRR
201: KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV

Arabidopsis Description

RRFRibosome-recycling factor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1X0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.