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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane, vacuole
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400058570 Potato cytosol, peroxisome, plasma membrane 98.96 95.41
Solyc08g007800.2.1 Tomato unclear 83.63 84.01
Solyc12g056440.1.1 Tomato unclear 85.12 82.07
VIT_02s0025g04540.t01 Wine grape extracellular 83.48 80.37
KRH38329 Soybean cytosol, peroxisome, plasma membrane 80.65 77.99
KRH08812 Soybean cytosol, peroxisome, plasma membrane 80.36 77.7
KRG91596 Soybean mitochondrion 80.06 77.19
KRH35227 Soybean plasma membrane 79.46 76.61
AT4G22990.3 Thale cress cytosol, mitochondrion, nucleus, plasma membrane 79.17 76.0
CDY10843 Canola mitochondrion 77.83 75.25
CDY41259 Canola mitochondrion 78.12 75.0
Bra014869.1-P Field mustard cytosol, peroxisome, plasma membrane 77.68 74.89
Bra013668.1-P Field mustard mitochondrion 77.98 74.86
CDY13281 Canola cytosol, peroxisome, plasma membrane 77.83 74.29
CDX86744 Canola cytosol, peroxisome, plasma membrane 77.68 74.15
AT4G11810.1 Thale cress plasma membrane 77.53 73.69
Solyc01g091870.2.1 Tomato cytosol 70.98 68.34
Solyc04g026050.1.1 Tomato extracellular 5.65 27.14
Solyc10g050320.1.1 Tomato cytosol 3.57 25.0
Solyc08g044470.1.1 Tomato cytosol 4.91 24.26
Solyc12g082710.1.1 Tomato cytosol 3.87 11.26
Solyc10g050310.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 0.45 1.66
Solyc02g043960.1.1 Tomato extracellular 0.0 0.0
Protein Annotations
MapMan:24.2.2.2.3GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0055085InterPro:IPR004331InterPro:IPR020846UniProt:K4CP20InterPro:MFSInterPro:MFS_dom
InterPro:MFS_trans_sfPFAM:PF03105PFAM:PF07690PFscan:PS51382PANTHER:PTHR23510PANTHER:PTHR23510:SF55
InterPro:SPX_domSUPFAM:SSF103473EnsemblPlantsGene:Solyc08g080200.2EnsemblPlants:Solyc08g080200.2.1TMHMM:TMhelixUniParc:UPI000276B707
SEG:seg:::::
Description
No Description!
Coordinates
chr8:-:63520000..63526605
Molecular Weight (calculated)
75279.3 Da
IEP (calculated)
5.160
GRAVY (calculated)
0.199
Length
672 amino acids
Sequence
(BLAST)
001: MKKKVKQYDN QIKAGSLDRR HVLKDFSRML DNQIERIVLF MLEQQGVLAS RISELNKQQE SLQEQPDISK IIELRESYRD VGRDLLKLLF FVEINAIGLR
101: KILKKFDKRF GYRFTDYYVK TRANHPYSQL QQVFKHVGLG AVVGAISRNL ADLQDRQGSY LSIYDQPSLP LQDSVVDSLQ AAVDRLSHST NFLNFLAQHA
201: LIMQEEFPTP VEEQVDDQRY HFMSLILNLA NTFLYMVNTY IIVPTADDYS MSLGAAATVC GIVIGAMAIA QIFSSVYFSA WSNRSYFRPL VFSSIVLFVG
301: NIMYALAYDL NSIPVLLIGR IFCGLGSARA VNRRYISDCV PLKIRMQASA GFVSASALGM ACGPALAGLL QTNFKIYKLT FNQDTLPGWL MAFAWLVYLI
401: WLWISFREPA TETEVNTGPQ EPANNVENDV LESGITQPLL LKVEDNQQDD ENDQEYDESE EAPEESRQPA NSIAEAYRLL TPSVKVQLLI YFMLKYAMEI
501: LLSESSVVTT YYFSWSTGTV AIFLACLGLT VLPINVVVGS YISNMFEDRQ ILLASEIMVF LGILGSFHIV SPYTVPQYVC SGLIMFVAAE VLEGVNLSLL
601: SRVMSSRLSR GTYNGGLLST EAGTFARVIA DVTITLAGYL GQSKLLNVTL LPSLLICVAS IIATCYTYNS LY
Best Arabidopsis Sequence Match ( AT4G22990.2 )
(BLAST)
001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK
101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR
401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSEAVQDVN LEKGMKQPLL LTSEEIEEQG EDECDGSEEA SEDSRTPANS
501: ILAAYRLLTP SVKVQLLIYF MLKYAMEILL SESSVITTYY FGWSTSSVAI FLFCLGLTVL PVNLVVGSYI SNMFEDRQIL LVSEIMVCVG ILLSFHVVVP
601: YTVPQYVCSG LIMFVSAEVL EGVNLSLLSR VMSSRLSRGT YNGGLLSTEA GTIARVIADA TITVAGFFGR NMLLNVTLLP SLVICVLSIV ATCFTYNSLY
Arabidopsis Description
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JMQ7]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.