Factsheet for Solyc12g056440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
vacuole 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010867	Potato	extracellular, plasma membrane, vacuole	34.72	94.16
Solyc08g080200.2.1	Tomato	unclear	82.07	85.12
VIT_02s0025g04540.t01	Wine grape	extracellular	83.5	83.38
Solyc08g007800.2.1	Tomato	unclear	79.2	82.51
KRH38329	Soybean	cytosol, peroxisome, plasma membrane	80.63	80.86
KRH08812	Soybean	cytosol, peroxisome, plasma membrane	80.2	80.43
KRG91596	Soybean	mitochondrion	78.62	78.62
KRH35227	Soybean	plasma membrane	78.05	78.05
AT4G22990.3	Thale cress	cytosol, mitochondrion, nucleus, plasma membrane	78.34	78.0
CDY10843	Canola	mitochondrion	76.61	76.83
CDY41259	Canola	mitochondrion	76.9	76.57
Bra013668.1-P	Field mustard	mitochondrion	76.76	76.43
Bra014869.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.9	75.9
CDY13281	Canola	cytosol, peroxisome, plasma membrane	76.18	75.43
AT4G11810.1	Thale cress	plasma membrane	76.47	75.39
CDX86744	Canola	cytosol, peroxisome, plasma membrane	75.9	75.14
Solyc01g091870.2.1	Tomato	cytosol	71.16	71.06
Solyc04g026050.1.1	Tomato	extracellular	5.31	26.43
Solyc08g044470.1.1	Tomato	cytosol	5.02	25.74
Solyc10g050320.1.1	Tomato	cytosol	3.44	25.0
Solyc12g082710.1.1	Tomato	cytosol	3.73	11.26
Solyc10g050310.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	0.43	1.66
Solyc02g043960.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

MapMan:24.2.2.2.3	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	InterPro:IPR004331	InterPro:IPR020846	UniProt:K4DFX5	InterPro:MFS	InterPro:MFS_dom
InterPro:MFS_trans_sf	PFAM:PF03105	PFAM:PF07690	PFscan:PS51382	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55
InterPro:SPX_dom	SUPFAM:SSF103473	EnsemblPlantsGene:Solyc12g056440.1	EnsemblPlants:Solyc12g056440.1.1	TMHMM:TMhelix	UniParc:UPI0002769EB9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:62362388..62373798

Molecular Weight (calculated)

78006.7 Da

IEP (calculated)

5.326

GRAVY (calculated)

0.189

Length

697 amino acids

Sequence
(BLAST)

001: MVAFGKKLKE RQIQEWQGYY INYKVMKKKV KEYADQIQDG ALNQRYVLKD FSRMLDKEIE KVVLFLLEQQ GVFARRISQL NEQQDSLQEQ PDISKVTELR
101: EAYRNVGRDL LKLLFFVEIN AIGLRKILKK FDKRFGYKFT DYYVKTRANH PYSQLQQVFN NVGLGAVVGA ISRNLADLQD REGSYLSIYD QPALPLQDSV
201: VDSMEAAIDR LSYSTNFLNF SVQRSLIMLE ELPTPVEEHV DDQRYHFMSL LLNLANTFLY MINTYIVVPT ADDYSMSLGA AATVCGIVIG AMAVAQVFSS
301: VYFSAWSNRS YFRPLVFSSI VLFVGNVMYA LAYDLKSIPV LLIGRIFCGL GSARAVNRRY ISDCVPLKIR MQASAGFVSA SALGMACGPA LAGLLQTNFK
401: IYKLTFNQDT LPGWVMAFAW LLYLIWLGIS FREPAQETDE VNNFSQKANA AENDALERGV VQPLLLQSVG AEQDNEGDQE GDGSEEAQEE SRRPANSIEE
501: AYRLLTPSVK VQLLIYFMLK YAMEVLLSES SVVTTYYFSW STSAVAIFLA CLGLTVLPVN ILVGSYISNI FEDRQILLAS EIMVCLGILL SFQVIIPYSV
601: PQYVCSGLLM FVSAEVLEGV NLSLLSRVMS SRLSRGTYNG GLLSTEAGTI ARVIADATIT LAGYLGQSKL LNVTLLPSLL ICIASIFATC RTYNSLY

Best Arabidopsis Sequence Match ( AT4G22990.1 )
(BLAST)

001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK
101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR
401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSAVQDVNL EKGMKQPLLL TSEEIEEQGE DECDGSEEAS EDSRTPANSI
501: LAAYRLLTPS VKVQLLIYFM LKYAMEILLS ESSVITTYYF GWSTSSVAIF LFCLGLTVLP VNLVVGSYIS NMFEDRQILL VSEIMVCVGI LLSFHVVVPY
601: TVPQYVCSGL IMFVSAEVLE GVNLSLLSRV MSSRLSRGTY NGGLLSTEAG TIARVIADAT ITVAGFFGRN MLLNVTLLPS LVICVLSIVA TCFTYNSLY

Arabidopsis Description

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JMQ7]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.