CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41259	Canola	mitochondrion	96.55	95.86
AT4G22990.3	Thale cress	cytosol, mitochondrion, nucleus, plasma membrane	90.65	90.0
CDY13281	Canola	cytosol, peroxisome, plasma membrane	83.02	81.96
CDX86744	Canola	cytosol, peroxisome, plasma membrane	82.88	81.82
KRH08812	Soybean	cytosol, peroxisome, plasma membrane	79.86	79.86
KRH38329	Soybean	cytosol, peroxisome, plasma membrane	79.42	79.42
CDX93857	Canola	endoplasmic reticulum, extracellular	10.65	78.72
VIT_02s0025g04540.t01	Wine grape	extracellular	78.99	78.65
PGSC0003DMT400058570	Potato	cytosol, peroxisome, plasma membrane	78.13	77.91
Solyc08g080200.2.1	Tomato	unclear	75.25	77.83
PGSC0003DMT400032620	Potato	mitochondrion	77.55	77.67
Solyc08g007800.2.1	Tomato	unclear	74.39	77.28
KRG91596	Soybean	mitochondrion	77.41	77.19
KRH35227	Soybean	plasma membrane	77.41	77.19
CDY45470	Canola	mitochondrion	76.55	76.66
CDY45970	Canola	mitochondrion	76.83	76.61
Solyc12g056440.1.1	Tomato	unclear	76.83	76.61
CDY66560	Canola	cytosol, mitochondrion, nucleus, peroxisome	76.4	75.64
PGSC0003DMT400010867	Potato	extracellular, plasma membrane, vacuole	27.91	75.49
CDY64893	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	76.12	75.36
CDX73315	Canola	mitochondrion	13.24	70.77
CDY28410	Canola	golgi, nucleus, plasma membrane	48.2	68.09
CDX71233	Canola	nucleus	13.24	66.67
CDY41366	Canola	extracellular, golgi	12.52	54.72

Protein Annotations

MapMan:24.2.2.2.3	GO:A0A078FFH8	UniProt:A0A078FFH8	EnsemblPlants:CDY10843	ProteinID:CDY10843	ProteinID:CDY10843.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00048720001	InterPro:IPR004331	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF03105	PFAM:PF07690	PFscan:PS51382	PANTHER:PTHR23510	PANTHER:PTHR23510:SF55	InterPro:SPX_dom
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0004EE53DA	SEG:seg	:	:

Description

BnaC01g14580DBnaC01g14580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFH8]

Coordinates

chrLK032007:-:226182..229795

Molecular Weight (calculated)

77775.7 Da

IEP (calculated)

6.781

GRAVY (calculated)

0.223

Length

695 amino acids

Sequence
(BLAST)

001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV NQYGRQLQGG NLERRQVLKD FSKMLDNQIE KVALFMLEQQ GILASRLQRL RESHDALQEE PEISHIAYLK
101: EGYRAVGQDL LKLLFFVEMN AIGVRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVYK HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIKAAVDR LTHSTNFLNF MAQHAFIMQQ ELPSPQDEEE AVEEDRRYHF MSLLLNLVNT FLYMVNTYII VPTADDYSMS LGAAATVCGV VIGAMAVAQL
301: FSSVYFSAWS NKSYFKPLIF SSIVLFIGNL LYALAFDFNS IAVLLIGRLF CGLGSARAVN RRYISDCVPL KIRMQASAGF VSASALGMAC GPALAGLLQT
401: RFKIYKLTFN QNTLPGWVMA VAWLMYLVWL AISFRELALE PEESHSTSKD SNNSEAVQDG NLESGIKQPL LITSEEIDED DSEEASEESR APVNSIGAAY
501: RLLTPSVKVQ LLIYFMLKYA MEILLSESSV ITTYYFGWST SSVAIFLACL GLTVLPVNIV IGSYISNMFE DRQILLVSEI MVCVGILFSF NVLVPYTVPQ
601: YVCSGLIMFV SAEVLEGVNL SLLSRVMSSR LSRGTYNGGL LSTEAGTIAR VIADVTITVA GYFGRDMLLN VTLLPSLVTC VVSIVATCFT YNSLY

Best Arabidopsis Sequence Match ( AT4G22990.2 )
(BLAST)

001: MVAFGKKLKE RSIQEWQGYY INYKLMKKKV KQYSRQLEGG NLERRHVLKD FSRMLDNQIE KIALFMLEQQ GLLASRLQTL RGSHDALQEQ PDISHMSYLK
101: EEYRAVGQDL LKLLFFVEMN AIGIRKILKK FDKRFGYRFT NYYVKTRANH PYSELQQVFR HVGLGAVVGA VSRNLHELQN NQGSYLSIYD QPVLPLQDPV
201: VDSIRAAVDR LTRSTNFLHF MAQHALIMQE ELPSPQDEEG EEEDGRYHFM SLLLNLVNTF LYMVNTYIIV PTADDYSMSL GAAATVCGVV IGAMAVAQLF
301: SSVYFSAWSN RSYFKPLIFS SIVLFIGNLL YALAFDFNSI AVLLIGRLFC GLGSARAVNR RYISDCVPLK IRMQASAGFV SASALGMACG PALAGLLQIR
401: FKIYKLTFNQ DTLPGWVMAV AWLIYLVWLA ISFREPAREP EEIPKTSEES NHSEAVQDVN LEKGMKQPLL LTSEEIEEQG EDECDGSEEA SEDSRTPANS
501: ILAAYRLLTP SVKVQLLIYF MLKYAMEILL SESSVITTYY FGWSTSSVAI FLFCLGLTVL PVNLVVGSYI SNMFEDRQIL LVSEIMVCVG ILLSFHVVVP
601: YTVPQYVCSG LIMFVSAEVL EGVNLSLLSR VMSSRLSRGT YNGGLLSTEA GTIARVIADA TITVAGFFGR NMLLNVTLLP SLVICVLSIV ATCFTYNSLY

Arabidopsis Description

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JMQ7]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.